Pinned Repositories
10X_fasta_to_gfa
auto_clone
A Python based server for making Gibson cloning a little faster
doSameSpeciesLiftOver_nextflow
A NextFlow pipeline to lift over GFF3 files using the UCSC liftover tools
funannotate
Eukaryotic Genome Annotation Pipeline
guppy_gpu_singularity
A Singularity file intended for SingularityHub, for the Oxford Nanopore Technologies guppy gpu caller. Based off https://hub.docker.com/r/genomicpariscentre/guppy/dockerfile
photocyte.github.io
Personal website, built with hydejack
plot_mitochondrial_genome_with_CIRCOS
repeatModeler2_nf
Nextflow workflow to easily run RepeatModeler with conda and singularity
photocyte's Repositories
photocyte/repeatModeler2_nf
Nextflow workflow to easily run RepeatModeler with conda and singularity
photocyte/guppy_gpu_singularity
A Singularity file intended for SingularityHub, for the Oxford Nanopore Technologies guppy gpu caller. Based off https://hub.docker.com/r/genomicpariscentre/guppy/dockerfile
photocyte/genomeScope_nf
Nextflow workflow for easy genomescope run
photocyte/luciferase-PPX-predictor-nf
A Nextflow pipeline to try and automate some aspects of luciferase gene ab inito structure prediction
photocyte/awesome-workflow-engines
A curated list of awesome open source workflow engines
photocyte/bioanalyzeR
R tools for Agilent electrophoresis data
photocyte/cas
Content Addressible Storage
photocyte/container-ontology
Container ontology for use with PAML (Protocol Activity Markup Language)
photocyte/django_react
photocyte/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
photocyte/dockerfiles
My personal dockerfiles (probably broken)
photocyte/dpu
Data Processing Unit for eVOLVER
photocyte/gnt_paper
photocyte/hardware
eVOLVER Hardware (PCB, 3D printed parts)
photocyte/IR-MALDESI-MS
Open source CAD models and C# software for making a low-cost IR-MALDESI instrument
photocyte/jupyter_notebooks
My personal Jupyter notebooks.
photocyte/jupyverse
A Jupyter server based on FastAPI
photocyte/kozak_extract_nextflow
photocyte/macports-ports
The MacPorts ports tree
photocyte/mview
MView extracts and reformats the results of a sequence database search or multiple alignment.
photocyte/mzmine2
MZmine 2 source repository
photocyte/mzmlkit
photocyte/ot2-controller
A SiLA 2 complaint controller for an Opentrons OT-2 liquid handling robot.
photocyte/Plateo
🤖 Python biolab automation library: parsers, reports generators, picklists simulators, and more
photocyte/primer3_nf
A Nextflow wrapper for primer3
photocyte/recoll-webui_singularity
photocyte/shournal_singularity
photocyte/summarize_directory_contents_to_HTML
A python program with outputs & opens an HTML table summarizing the files in a directory
photocyte/tmsu_singularity
photocyte/ucsc-ospo