Pinned Repositories
FastSMC
FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the age of IBD segments and scales to large biobank datasets. https://doi.org/10.1038/s41467-020-19588-x
ARGON
Fast, whole-genome simulation of the discrete time Wright-Fisher process
ASMC
Ascertained Sequentially Markovian Coalescent
Baldwin-effect
Hinton and Nowlan's experiment on Baldwin effect
DemographicLanguageParser
Parses a file describing the demographic history of one or more populations
DoRIS
Demographic reconstruction via IBD sharing
Eagle
Haplotype phasing software
GENOME-IBD-simulator
GENOME coalescent simulator, modified to output ground truth IBD segments.
IBDMUT
Infer mutation and gene conversion rates using identical-by-descent segments
ParseTreesOutputIBD_FastSimCoal
Parses Newick trees from FastSimCoal and outputs IBD segments
pierpal's Repositories
pierpal/ARGON
Fast, whole-genome simulation of the discrete time Wright-Fisher process
pierpal/Baldwin-effect
Hinton and Nowlan's experiment on Baldwin effect
pierpal/IBDMUT
Infer mutation and gene conversion rates using identical-by-descent segments
pierpal/ASMC
Ascertained Sequentially Markovian Coalescent
pierpal/DoRIS
Demographic reconstruction via IBD sharing
pierpal/DemographicLanguageParser
Parses a file describing the demographic history of one or more populations
pierpal/Eagle
Haplotype phasing software
pierpal/GENOME-IBD-simulator
GENOME coalescent simulator, modified to output ground truth IBD segments.
pierpal/ParseTreesOutputIBD_FastSimCoal
Parses Newick trees from FastSimCoal and outputs IBD segments