pierrelarmande
My main research interests are Data integration, Semantic Web, Knowledge management for plant genomics.
IRDMontpellier
Pinned Repositories
AgroLD
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.
agrold-api
AgroLD-ETL
Python Library ETL for AgroLD
agrold-flask
agrold-schema
agrold-sparql
OryzaGP
A dataset for Named Entity Recognition for rice gene
Table2Annotation
In semantic annotation, semantic concepts are linked to natural language. Semantic anno-tation helps in boosting the ability to search and access resources and can be used in in-formation retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to identify ontological concepts in scientific text contained in spreadsheets. We developed a tool that can handle various types of spreadsheets. Further-more, we used the NCBO Annotator API provided by BioPortal to enhance the semantic annotation functionality to cover spreadsheet data. Table2Annotation has strengths in cer-tain criteria such as speed, error handling, and complex concept matching. Keywords: bioinformatics, ontologies, semantic annotation
AgroLD_ETL
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. AgroLD ETL is the Python packages developed to transform plant datasets in RDF. Packages are developped for data standards such as GFF,GAF, VCF and specific plant databases.
AgroLD_webapp
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.
pierrelarmande's Repositories
pierrelarmande/OryzaGP
A dataset for Named Entity Recognition for rice gene
pierrelarmande/Table2Annotation
In semantic annotation, semantic concepts are linked to natural language. Semantic anno-tation helps in boosting the ability to search and access resources and can be used in in-formation retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to identify ontological concepts in scientific text contained in spreadsheets. We developed a tool that can handle various types of spreadsheets. Further-more, we used the NCBO Annotator API provided by BioPortal to enhance the semantic annotation functionality to cover spreadsheet data. Table2Annotation has strengths in cer-tain criteria such as speed, error handling, and complex concept matching. Keywords: bioinformatics, ontologies, semantic annotation
pierrelarmande/agrold-api
pierrelarmande/agrold-flask
pierrelarmande/agrold-schema
pierrelarmande/AgroLD_Data_Linking_Benchmark
AgroLD datasets for Data Linking Benchmarks
pierrelarmande/agroLDETL
pierrelarmande/anr-git.github.io
pierrelarmande/Bioinformatique
pierrelarmande/dig-ai.github.io
Deciphering
pierrelarmande/ETL_SQL_Python
An exploration of ETL and the SQLAlchemy library in Python
pierrelarmande/GeneTableMiner
pierrelarmande/guitar.github.io
pierrelarmande/HAU902I_Advanced_Bioinformatics
pierrelarmande/ISWC-use-case
pierrelarmande/KG
pierrelarmande/KG-Linkage-Embedding
First approch of knowledge graphs by enrichment and embeddings
pierrelarmande/Knowledge-Graph-Tutorials-and-Papers
Insightful Tutorials and Papers about Knowledge Graphs
pierrelarmande/notebooks
pierrelarmande/pierrelarmande.github.io
💎 🐳 A super customizable Jekyll theme for personal site, team site, blog, project, documentation, etc.
pierrelarmande/pierrelarmande_test.github.io
Pierre Larmande's homepage
pierrelarmande/PyRice_archive
pierrelarmande/pythondata
repo for code published on pythondata.com
pierrelarmande/rdfsummit
RDF summit for life science
pierrelarmande/RiceNLP
Package to manage rice paper and abstract from pubmed and extract relevant gene functional informations
pierrelarmande/scripts
scripts basket
pierrelarmande/SPARQL_Federated
pierrelarmande/staff-info
Interactive SouthGreen Staff Information page
pierrelarmande/training_resources
Training resources collected and aggregated
pierrelarmande/Webscraping-and-Analysis
A two part repo consisting of scraping Sci-Fi movies from IMDB.com and cleaning the data in part one. In part two, I perform EDA and machine learning. More on part two coming soon.