/python-practical-env

Primary LanguageJupyter Notebook

Conda environment for Python programming

https://github.com/pierrepo/python-practical-env

Try the environment in your browser with Binder:

Binder

Create env

The environment should already exist in the computer rooms at the university.

mamba env update -f binder/environment.yml

Load env

conda activate ppoulain-python

Manually install Muscle

conda install -c bioconda muscle=3.8

Verify modules and tools

Run Jupyter Lab

jupyter lab

open binder/test_modules.ipynb

Kernel -> Restart Kernel And Run All Cells

Run script

bash binder/test_modules.sh