Pinned Repositories
cbioportal
cBioPortal for Cancer Genomics
cbioportal-frontend
React Frontend of cBioPortal :tada:
datahub
A centralized location for storing curated data from cBioPortal
mutation-mapper
jstat
JavaScript Statistical Library
antlr4
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files.
Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
platform-etl-backend
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
wdl_sandbox
WDL / Cromwell Sandbox
pieterlukasse's Repositories
pieterlukasse/platform-etl-backend
pieterlukasse/wdl_sandbox
WDL / Cromwell Sandbox
pieterlukasse/Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
pieterlukasse/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
pieterlukasse/civic-server
Backend Server for CIViC Project
pieterlukasse/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
pieterlukasse/data_pipeline-1
Code for the data processing pipeline
pieterlukasse/gatk
Official code repository for GATK versions 4 and up
pieterlukasse/GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
pieterlukasse/genome-nexus
Interpreting cancer genomics data
pieterlukasse/genome-nexus-importer
Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/
pieterlukasse/GenomeDerivedDiagnosis
pieterlukasse/ksg_web
KSG Public Web Site
pieterlukasse/manta
Structural variant and indel caller for mapped sequencing data
pieterlukasse/mermaid
Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown
pieterlukasse/OHDSI-ETL-Synthea
Conversion from Synthea CSV to OMOP CDM
pieterlukasse/pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
pieterlukasse/platform
Issue tracker for Open Targets Platform
pieterlukasse/platform-app
Open Targets Platform web app
pieterlukasse/pytest-wdl
WDL plugin for pytest
pieterlukasse/rest_api
Flask-based Rest API for OpenTargets CoreDB Data
pieterlukasse/rewrite
Automated mass refactoring of source code.
pieterlukasse/Signal-Android
A private messenger for Android.
pieterlukasse/svaba
Structural variation and indel detection by local assembly
pieterlukasse/tasks
A collection of reusable WDL tasks. Category:Other
pieterlukasse/Testathon-2020
Repo For the WDL Testathon held February 18 - 19, 2020
pieterlukasse/vcftomafgnanno
pieterlukasse/wdl
Workflow Description Language - Specification and Implementations
pieterlukasse/wdl-ide
Rich IDE support for Workflow Description Language
pieterlukasse/WebAPI
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications