Pinned Repositories
BinaryPursuitSpikeSorting
Detect synchronous and overlapped spikes in extracellular recordings using Binary Pursuit (Pillow et al 2013)
CDMentropy
Centered Dirichlet Mixture entropy estimator for binary data
GLMspiketools
Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
GLMspiketraintutorial
Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
GLMspiketraintutorial_python
LNPfitting
Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood
neuroGLM
Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
psytrack_learning
Extension of Psytrack to include learning
PYMentropy
Discrete entropy estimator using the Pitman-Yor mixture (PYM) prior
StepRampMCMC
pillowlab's Repositories
pillowlab/GLMspiketraintutorial
Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
pillowlab/neuroGLM
Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
pillowlab/GLMspiketraintutorial_python
pillowlab/GLMspiketools
Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
pillowlab/LNPfitting
Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood
pillowlab/PYMentropy
Discrete entropy estimator using the Pitman-Yor mixture (PYM) prior
pillowlab/psytrack_learning
Extension of Psytrack to include learning
pillowlab/adaptivePsychophysicsToolbox
For effective analysis and optimal experiment design for psychophysics experiments
pillowlab/fastASD
Fast inference for high-D receptive fields using Automatic Smoothness Determination (ASD)
pillowlab/gaudy-images
Code for "High-contrast 'gaudy' images improve the training of deep neural network models of visual cortex" by Cowley and Pillow, NeurIPS 2020.
pillowlab/PoissonBalancedNets
Implementation of Balanced Spiking Networks with Poisson Neurons, from Rullan & Pillow 2019.
pillowlab/StepRampMCMC
pillowlab/activelearningTCs
pillowlab/iSTAC
information-theoretic Spike-Triggered Average and Covariance (iSTAC) estimator for receptive fields
pillowlab/mTDRdemo
Self-contained code to demonstrate how to use mTDR.
pillowlab/adaptiveOptimalTraining
adaptive optimal training of animal behavior
pillowlab/CBEM
conductance-based encoding model
pillowlab/GaussHermiteQuadrature
Gauss-Hermite Quadrature (for approximating integrals w.r.t. a Gaussian density)
pillowlab/VLR-STRF
variational low rank estimation for spatiotemporal receptive fields
pillowlab/multilinearRegression
pillowlab/DRD
DRD model described in Wu et.al, 2014
pillowlab/neu314data
Datasets for "Mathematical Tools for Neuroscience" (NEU 314)
pillowlab/raisedCosineBasis
makes raised cosine basis with log scaling of x axis
pillowlab/automaticRidgeRegression
Maximum-evidence linear regression with ridge and graph Laplacian (smoothing) priors
pillowlab/decoupledLaplace
Some simple code to test out decoupled Laplace approximation for evidence optimization
pillowlab/invBlockTriDiag
Efficiently compute central and off-diagonal blocks of the inverse of a block-tridiagonal matrix
pillowlab/neu560data
Datasets for NEU 560
pillowlab/ratmapGPs
GP regression for place field estimation
pillowlab/simple-IO-HMM
Implementation of an input-output HMM with linear-Gaussian outputs
pillowlab/subunit_mele
Moment based estimator for subunit model described in Wu et.al, 2015