STREAM interactive website stream.pinellolab.org
In order to make STREAM user friendly and accessible to non-bioinformatician, we have created an interactive website: http://stream.pinellolab.org
The website implements the features of stream command line and in addition provides interactive and exploratory panels to visualize single-cell trajectories.
The website offers two functions:
- To run STREAM on single-cell transcriptomic or epigenomic data provided by the users.
- The first interactive database of precomputed trajectories with results for seven published datasets. The users can visualize and explore cells’ developmental trajectories, subpopulations and their gene expression patterns at single-cell level.
Note: The website can also run on a local machine using the provided Docker image we have created.
Docker can be downloaded freely from here: https://store.docker.com/search?offering=community&type=edition
To get an image of STREAM_web, simply execute the following command:
$ docker pull pinellolab/stream_webTo run the website on a local machine after the Docker installation, from the command line execute the following command:
$ docker run -p 10001:10001 pinellolab/stream_webAfter the execution of the command the user will have a local instance of the website accessible at the URL: http://localhost:10001
To stop the website, from the command line execute the following command:
$ docker ps
$ docker kill CONTAINER_ID