/engineering-protein-graph-data

By Irsyad: :octocat: The project documentation and codes in the study of ion-channel in OS-CVD categories implementing graph data API. Summer 2021.

Primary LanguageJupyter Notebook

File Description:

Cardiovascular-KG:

Project to build a Knowledge graph with unified cardiac proteomes

Neo4j Python Driver:

Scripts that use the python driver in Neo4j. Includes Centrality Algorithms, Neo4j import/query commands via python using transaction bookmarking, Neo4j data extraction to csv using python

Ion Channel-KG:

Building a Knowledge graph with ion channel proteins

DrugBank-Extraction:

Scripts to extract from Drugbank, includes script that parses from drugbank xml

Reactome Extraction:

Extracts from Reactome using REST

Uniprot-KB Extraction:

Extracts from uniprot using REST, Bioservices Documentation

Author: Irsyad Adam, 405407035