Pinned Repositories
COPILOT
Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
maize_single_cell_cis_regulatory_atlas
multispecies_TE_CRE_analysis
NAM-genomes
Detailed bioinformatics scripts and methods used in the NAM genome paper.
phaseLD
LD-based phasing algorithm for segregating F1 populations (pseudo-oneway testcross)
plant_scATAC_STAR_Protocol
plant_sciATAC
Workflow for sci-ATAC-seq analysis in Arabidopsis thaliana roots
plantformatics.github.io
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
scATAC_seq_pipeline
Socrates
plantformatics's Repositories
plantformatics/Socrates
plantformatics/maize_single_cell_cis_regulatory_atlas
plantformatics/scATAC_seq_pipeline
plantformatics/plant_sciATAC
Workflow for sci-ATAC-seq analysis in Arabidopsis thaliana roots
plantformatics/phaseLD
LD-based phasing algorithm for segregating F1 populations (pseudo-oneway testcross)
plantformatics/plant_scATAC_STAR_Protocol
plantformatics/COPILOT
Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
plantformatics/multispecies_TE_CRE_analysis
plantformatics/NAM-genomes
Detailed bioinformatics scripts and methods used in the NAM genome paper.
plantformatics/plantformatics.github.io
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
plantformatics/plantformatics.github.io.backup
Professional Website
plantformatics/rice_rec_rates