plijnzaad

advanced-git

some data and templates for an slightly more advanced git course

atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

CHETAH

scRNA-seq cell type identification

demultiplex

Code for demultiplexing fastq files, and a library for flexibly allowing mismatches during barcode recognition. **This code has moved to https://bitbucket.org/princessmaximacenter/demultiplex .**

elixir-cloud-genomics

phtools

various tools. Mostly shell, perl and R

quilt

program to detect hydrophobic patches on protein surfaces

scseq

Scripts and tools for single cell RNAseq. This code has moved to https://bitbucket.org/princessmaximacenter/scseq/

single-cell-sequencing

scripts and functions to analyse single-cell sequencing data. This code has moved to https://bitbucket.org/princessmaximacenter/platediagnostics

plijnzaad/quilt

program to detect hydrophobic patches on protein surfaces

plijnzaad/phtools

various tools. Mostly shell, perl and R

plijnzaad/elixir-cloud-genomics

plijnzaad/excelerate-scRNAseq

Single RNA-seq data analysis with R (Finland, May, 2019)

plijnzaad/plijnzaad.github.io

plijnzaad/scseq

Scripts and tools for single cell RNAseq. This code has moved to https://bitbucket.org/princessmaximacenter/scseq/

plijnzaad/single-cell-sequencing

scripts and functions to analyse single-cell sequencing data. This code has moved to https://bitbucket.org/princessmaximacenter/platediagnostics

plijnzaad/advanced-git

some data and templates for an slightly more advanced git course

plijnzaad/atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

plijnzaad/CHETAH

scRNA-seq cell type identification

plijnzaad/demultiplex

Code for demultiplexing fastq files, and a library for flexibly allowing mismatches during barcode recognition. **This code has moved to https://bitbucket.org/princessmaximacenter/demultiplex .**

plijnzaad/chimeraviz

chimeraviz is an R package that automates the creation of chimeric RNA visualizations.

plijnzaad/ensembldb

This is the ensembldb development repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ensembldb.html Contributions: https://github.com/jotsetung/ensembldb. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ensembldb or https://github.com/jotsetung/ensembldb/issues.

plijnzaad/FusionAnnotator

FusionAnnotator source code

plijnzaad/FusionFilter

source code for FusionFilter

plijnzaad/FusionInspector

FusionInspector code

plijnzaad/HubrechtBioinformatics.github.io

Bioinformaticians at the Hubrecht Institute

plijnzaad/ibls-expression

Exercises for the UBC Master's course Introduction to Bioinformatics for the Life Sciences

plijnzaad/inferCNV

Inferring CNV from Single-Cell RNA-Seq

plijnzaad/jupyter-bigdata-notebooks

Notebooks for the big data group

plijnzaad/ReproducibleResearch

Workshop on Reproducible Science using Jupyter notebooks

plijnzaad/rsg_workshop

Planning and web page for RSG workshsop

plijnzaad/shell-extras

Extra material for Software Carpentry shell lesson.

plijnzaad/STAR-Fusion

STAR-Fusion codebase

plijnzaad/warp

WDL Analysis Research Pipelines

plijnzaad/wdl-mode

WDL (Workflow Description Language) major mode