poldrack/AdvancedJupyter

Materials for advanced Jupyter session

Advanced Jupyter topics

• The structure of a .ipynb file
• Why ipynb files don't play nicely with version control
• Using jupytext
• Using VSCode with jupyter notebooks: https://code.visualstudio.com/docs/languages/python#_jupyter-notebooks
• Code linting and formatting
• Magic commands: https://ipython.readthedocs.io/en/stable/interactive/magics.html
• Executing jupyter notebooks from the command line using nbconvert

Setting up the environment

If you want to set up your environment to run the code, you can do the following:

1. Install the uv package management system
2. Clone this git repository and cd into the directory
3. run uv pip install -r pyproject.toml to install the python packages
4. run uv venv to set up the virtual environment
5. run source .venv/bin/activate to activate the virtual environment.

Resources

• https://www.dataquest.io/blog/advanced-jupyter-notebooks-tutorial/