Pinned Repositories
allele_qc
Quality control for PomBase alleles
canto
The PomBase community curation tool
canto_tutorial
A static site with canto documentation for users to get started with Canto.
curation
PomBase curation
fypo
Fission Yeast Phenotype Ontology
genome_changelog
ncbi_submission
Code for submitting the pombe genome to NCBI
pombase-chado
PomBase code for accessing Chado
pombase-chado-json
Read a PomBase Chado database and write it as JSON
website
PomBase website v2
PomBase's Repositories
pombase/canto
The PomBase community curation tool
pombase/fypo
Fission Yeast Phenotype Ontology
pombase/curation
PomBase curation
pombase/website
PomBase website v2
pombase/pombase-chado
PomBase code for accessing Chado
pombase/canto_tutorial
A static site with canto documentation for users to get started with Canto.
pombase/allele_qc
Quality control for PomBase alleles
pombase/genome_changelog
pombase/ncbi_submission
Code for submitting the pombe genome to NCBI
pombase/pombase-chado-json
Read a PomBase Chado database and write it as JSON
pombase/pombase-domain-process
Extract the InterPro data for the PomBase proteins and write as JSON
pombase/pombase-legacy
Code for handling legacy PomBase data
pombase/pombase-python-web
Python web code for the PomBase project
pombase/create_pombase_spotlight
Small web app to create the text for the spotlight and adapt the image size
pombase/pombase-config
Shared configuration for PomBase projects
pombase/.github
pombase/all_previous_sgd_peptide_sequences
A simple set of scripts to generate a file with all old sgd protein sequences
pombase/allele_gene_variant_features_regex
Regular expression patterns for alllele variant features as described in the publication
pombase/chobo
Code for loading OBO files into a Chado database using COPY (prototype)
pombase/fypo_templates_spa
A simple interface to create FYPO terms from templates
pombase/goslims2gmt
Extract genes associated to go slims and convert them to gmt format using PomBase API
pombase/jbrowse
A modern genome browser built with JavaScript and HTML5.
pombase/pombase-historic-go-stats
PomBase historic GAF files
pombase/pombase-python
PomBase Python code
pombase/pombase_rc_string
A reference counted String class for PomBase
pombase/pombemine
pombase/pombemine-bio-sources
pombase/psi-mod-CV
Reactivated PSI-MOD ontology for molecular mass modifications
pombase/runoak_on_pombase
runoak on PomBase data
pombase/wc-gocam-viz
Web component to visualize GO-CAMs