ponnhide/pyCircos

Saving a plot

snowformatics opened this issue · 1 comments

Hi,

thanks for developing and maintaining pyCircos, looks very promising. I tried to reproduce your tutorial locally:

`

    import pycircos
    import matplotlib.pyplot as plt
    Garc  = pycircos.Garc
    Gcircle = pycircos.Gcircle

    #Set chromosomes
    circle = Gcircle()
    with open("test.csv") as f:
        f.readline()
        for line in f:
            line = line.rstrip().split(",")
    
            name = line[0]
            length = int(line[-1])
    
            arc  = Garc(arc_id=name, size=length, interspace=3, raxis_range=(950,1000), labelposition=60, label_visible=True)
    
            circle.add_garc(arc)
    
    circle.save()`

"test.csv" contains the data of example_data_chromosome_general.csv. The PDF file is empty, do you have any ideas what I did wrong?

I am working on Windows 10 and installed pyCircos via pip.

Thanks a lot!
Stefanie

Sorry I missed the "circle.set_garcs(-65,245)" command, it works now!