biopython
There are 216 repositories under biopython topic.
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
plotly/dash-cytoscape
Interactive network visualization in Python and Dash, powered by Cytoscape.js
ponnhide/pyCircos
python Circos
modernatx/seqlike
Unified biological sequence manipulation in Python
BjornFJohansson/pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
wheretrue/biobear
Work with bioinformatic files using Arrow, Polars, and/or DuckDB
cogent3/cogent3
Comparative Genomics Toolkit 3
chris-rands/biopython-coronavirus
Biopython Jupyter Notebook tutorial to characterize a small genome
Zsailer/phylopandas
Pandas DataFrames for phylogenetics
pyladies-brazil/grupo-estudo-bioinformatica
Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.
yachielab/QUEEN
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
RKMlab/perf
PERF is an Exhaustive Repeat Finder
RK900/Flu-Prediction
Predicting Future Influenza Virus Sequences with Machine Learning
moshi4/phyTreeViz
Simple phylogenetic tree visualization python package for phylogenetic analysis
moshi4/GBKviz
Easy-to-use web application for visualization and comparison of genomes in Genbank file
widdowquinn/2018-03-06-ibioic
Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
laelbarlow/amoebae
Workflow for identifying and classifying homologous gene/protein sequences
biocpp/biocpp-core
BioC++ core library (alphabet, meta, ranges)
jithin8mathew/Protein-feature-extraction
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
Edinburgh-Genome-Foundry/SnapGeneReader
👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
althonos/orthoani
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
biosustain/goodbye-genbank
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
rodogi/biographs
Python class to easily deal with protein networks.
nalomran/pubmed2doc
Write PubMed search results with two display options (citation or listview) to PDF or Word
vinisalazar/BioProv
A provenance library for bioinformatics workflows 🧬 🔀 📝
althonos/moclo
Modular cloning simulation with the MoClo framework in Python
bott0n/Needleman-Wunsch-Algorithm
Needleman-Wunsch Algorithm for global alignment and local alignment
dewshr/NCBI-GenBank-file-parser
This program can be used to parse the NCBI GenBank file to create a tabulated csv file.
kirai/bio_hacking
Biotech with biopython
biocpp/biocpp-io
BioC++ Input/Output library
kvdomingo/primerdriver
PrimerDriver - Automated design of mutagenic PCR primers
dillondaudert/proteindatasets
Creating and manipulating various protein sequence-structure datasets using Python, Julia, and other tools.
raghurama123/PyLifeS
A graduate-level elective course: Python Programming for Life Science Students
chasewnelson/SARS-CoV-2-ORF3d
Supplementary scripts for Nelson et al. (2020) paper on ORF3d
MountainMan12/SARS-Cov2-phylo
Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree