biopython
There are 264 repositories under biopython topic.
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
plotly/dash-cytoscape
Interactive network visualization in Python and Dash, powered by Cytoscape.js
ponnhide/pyCircos
python Circos
modernatx/seqlike
Unified biological sequence manipulation in Python
pydna-group/pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
wheretrue/biobear
Work with bioinformatic files using Arrow, Polars, and/or DuckDB
cogent3/cogent3
Comparative Genomics Toolkit 3
chris-rands/biopython-coronavirus
Biopython Jupyter Notebook tutorial to characterize a small genome
Zsailer/phylopandas
Pandas DataFrames for phylogenetics
moshi4/phyTreeViz
Simple phylogenetic tree visualization python package for phylogenetic analysis
yachielab/QUEEN
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
pyladies-brazil/grupo-estudo-bioinformatica
Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.
SevdanurGENC/Bioinformatics-with-Biopython-Lecture-Notes
This repo contains Bioinformatics lecture notes using Biopython.
RKMlab/perf
PERF is an Exhaustive Repeat Finder
satoshikawato/gbdraw
A genome diagram generator for microbes and organelles
althonos/pyorthoani
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
RK900/Flu-Prediction
Predicting Future Influenza Virus Sequences with Machine Learning
Edinburgh-Genome-Foundry/SnapGeneReader
👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
biocpp/biocpp-core
BioC++ core library (alphabet, meta, ranges)
moshi4/GBKviz
Easy-to-use web application for visualization and comparison of genomes in Genbank file
laelbarlow/amoebae
Workflow for identifying and classifying homologous gene/protein sequences
jithin8mathew/Protein-feature-extraction
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
widdowquinn/2018-03-06-ibioic
Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
rodogi/biographs
Python class to easily deal with protein networks.
biosustain/goodbye-genbank
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
vinisalazar/BioProv
A provenance library for bioinformatics workflows 🧬 🔀 📝
nalomran/pubmed2doc
Write PubMed search results with two display options (citation or listview) to PDF or Word
althonos/moclo
Modular cloning simulation with the MoClo framework in Python
bott0n/Needleman-Wunsch-Algorithm
Needleman-Wunsch Algorithm for global alignment and local alignment
EbodShojaei/sentinel
Sentinel is an AI agent that retrieves PubMed publications using phi3.5 with phidata to generate and run a MeSH search on NCBI Entrez.
dewshr/NCBI-GenBank-file-parser
This program can be used to parse the NCBI GenBank file to create a tabulated csv file.
kirai/bio_hacking
Biotech with biopython
biocpp/biocpp-io
BioC++ Input/Output library
raghurama123/PyLifeS
A graduate-level elective course: Python Programming for Life Science Students
kvdomingo/primerdriver
PrimerDriver - Automated design of mutagenic PCR primers