BjornFJohansson/pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Jupyter NotebookNOASSERTION
Issues
- 2
Docs not available anymore (?)
#233 opened by grassoste - 0
SeqFold
#229 opened by BjornFJohansson - 0
- 2
Lowercase `protospacer` does not work
#216 opened by dgruano - 2
- 9
Style
#196 opened by BjornFJohansson - 1
Improve typing of functions in 'crispr' module
#215 opened by dgruano - 4
- 3
- 2
Merge and new release pydna-6.0.0a29
#207 opened by BjornFJohansson - 2
- 0
Revise handling of double-cutting enzymes
#186 opened by manulera - 1
Separating detection of cutsites from cutting
#157 opened by manulera - 3
Delete stale branches?
#159 opened by manulera - 1
Revise getitem in Dseqrecord
#182 opened by manulera - 0
Edge case in Anneal.products
#197 opened by manulera - 1
tests/test_module_dseqrecord.py::test_figure fails
#198 opened by manulera - 2
- 0
Inconsisten behaviour of features when calling dseqrecord.shifted depending on strand
#195 opened by manulera - 0
- 0
Dseqrecord.shifted with argument 0 does not return a copy of the sequence, but the sequence itself
#194 opened by manulera - 2
- 0
Next getitem implementation for circular sequences
#191 opened by manulera - 0
- 0
- 8
Using poetry dependencies in github actions
#152 opened by manulera - 0
Type hinting
#176 opened by manulera - 3
Alternative assembly implementation
#165 opened by manulera - 4
Unexpected products from assemblies?
#166 opened by manulera - 2
- 4
- 2
what is pos in Dseq?
#153 opened by manulera - 2
- 1
Running sphinx documentation locally
#154 opened by manulera - 2
- 3
Infinite loop
#133 opened by jefe-jeff - 0
Genbank COMMENT to indicate overhangs
#151 opened by manulera - 1
- 1
Linear assembly producing misannotated sequences
#136 opened by JamesBagley - 3
- 3
Manually continue pcr method
#117 opened by ngamarra - 1
Race condition in ini writing with concurrent use
#105 opened by JacobHayes - 3
- 4
Issue with Primer class instantiation
#83 opened by zslastman - 2
[FR] Oligo Annealing for `Seq`s and `SeqRecord`s
#87 opened by jan-glx - 12
primer_design() not able to run
#90 opened by nick-chavez23 - 4
Wrong feature locations after sticky-end ligation
#88 opened by jan-glx - 4
- 2
Restriction digest yield TypeError
#89 opened by benweinberg89 - 4
cannot parse gb files using pydna.parsers.parse
#82 opened by AubinF