BjornFJohansson
Assistant professor at UMINHO, Braga, Portugal. Our group @MetabolicEngineeringGroupCBMA work in the field of fungal biotechnology.
Universidade do MinhoBraga, Portugal
Pinned Repositories
cobrapy_exercises
Notebooks showing basic use of cobrapy
dnaudit
DNAUDIT is a software tool that verifies cloning strategies expressed as text files using a very light markup. This format is identical to the one produced by some of the Pydnaweb tools.
google-python-exercises
Python 3 version of the google-python-exercises
pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
pydna-examples
https://github.com/MetabolicEngineeringGroupCBMA/pydna-examples
pydnaweb
Online PCR simulator, Tm calculator and primer designer and more!
pygenome
Pygenome provide Python access to the Saccharomyces cerevisiae genome.
seguid_calculator
A gui for calculating seguid checksums for biological sequences
WikidPad
WikidPad is a single user desktop wiki
ypkpathway
Automatic pathway assembly with the YeastPathwayKit
BjornFJohansson's Repositories
BjornFJohansson/pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
BjornFJohansson/seguid_calculator
A gui for calculating seguid checksums for biological sequences
BjornFJohansson/pydna-examples
https://github.com/MetabolicEngineeringGroupCBMA/pydna-examples
BjornFJohansson/pygenome
Pygenome provide Python access to the Saccharomyces cerevisiae genome.
BjornFJohansson/WikidPad
WikidPad is a single user desktop wiki
BjornFJohansson/pydnaweb
Online PCR simulator, Tm calculator and primer designer and more!
BjornFJohansson/dnaudit
DNAUDIT is a software tool that verifies cloning strategies expressed as text files using a very light markup. This format is identical to the one produced by some of the Pydnaweb tools.
BjornFJohansson/obsidian_git_experiment
BjornFJohansson/ypkpathway
Automatic pathway assembly with the YeastPathwayKit
BjornFJohansson/An-Hour-of-Python
:hourglass: An hour of introduction to Python. Using the Anaconda Python distribution and the Spyder editor.
BjornFJohansson/AutoSlideProcessor
Convert files in a Github repository using TravisCI (for example Libreoffice Impress 🢂 PDF) and push resulting files to a Dropbox folder
BjornFJohansson/plasmid-sketcher
Visual plasmid sketcher
BjornFJohansson/tm
Comparison of methods to calculate melting temperature for oligonucleotides
BjornFJohansson/awesome-biology
Curated (meta)list of resources for Biology.
BjornFJohansson/BjornFJohansson
My personal GitHub profile.
BjornFJohansson/CodonAdaptationIndex
Python Implementation of Codon Adaption Index
BjornFJohansson/flask-desktop
flask-desktop lets you create first class desktop applications in Python with HTML/CSS
BjornFJohansson/justfortest
blabla
BjornFJohansson/minaj
command line script to facilitate building conda packages and uploading to Anaconda cloud
BjornFJohansson/openVectorEditor
Teselagen's Open Source Vector/Plasmid Editor Component
BjornFJohansson/pLannotate
Webserver and command line tool for annotating engineered plasmids
BjornFJohansson/PyDymoLabel
A simple tool to print labels with Dymo printers
BjornFJohansson/pyelph
BjornFJohansson/pYPKa_ZE
pYPKa_ZE
BjornFJohansson/pyquizzer
A python package for the creation of tests and quizzes on and off line.
BjornFJohansson/robotology-superbuild
CMake/YCM-based superbuild to simplify the build process of robotology projects.
BjornFJohansson/ShareYourCloning_backend
The backend application for ShareYourCloning
BjornFJohansson/test
BjornFJohansson/warehouse
The Python Package Index
BjornFJohansson/ypk-xylose-pathways
Jupyter notebook files describing metabolic pathways for Saccharomyces cerevisiae D-xylose utilization made using the Yeast Pathway Kit.