ponnhide/pyCircos

pyCircos implementation

KonoganB opened this issue · 5 comments

KonoganB commented

Hello! i'd like to implement pyCircos into my Tool, but I do not manage to do it with the given doc. I can't even run the example scripts. Would you mind helping me out?

ponnhide commented

Sorry for my late response and thank you for interesting with my pyCircos. I made pyCricos as just hobby scripts, so I didn't manage in recent. However, I have the plan to update the pyCircos within a month and I'll prepare curated README. Please wait and sorry for the inconvenience.

akukalev commented

Hi, same question from my side. I was excited to find a python package for circos plots, but I'm not even able to run examples code. It would be really nice to see more details and/or validated examples.

ponnhide commented

I'm sorry for the inconvenience. Which kind of error did you face?

bw2 commented

One that currently doesn't work is this line https://github.com/ponnhide/pyCircos/blob/master/sample/eukaryote1/eukaryote1.py#L25
produces
AttributeError: module 'pycircos' has no attribute 'GENOME'

bw2 commented

I see the main class is now called Gcircle, and the tutorial / how_to_use example does work.