Pinned Repositories
calico
Estimating DNA contamination
fasta_nomissing.py
parse and filter a file of aligned fasta sequences
mpileup2consensus.py
Calling haploid genomes from BAM (samtools mpileup input)
mpileup_mismatch_pathogen.py
PMDtools
Compute postmortem damage patterns and decontaminate ancient genomes
point_heatmap
Plotting statistics on a world map as points with heatmap colors
popstats
Population genetic summary statistics
qpAdm_wrapper
A wrapper to estimate admixture proportions and test ancestry models using qpAdm
ry_compute
Inferring the biological sex of ancient genomic shotgun samples
samremovedup
Removing PCR duplicates based on start and end positions.
pontussk's Repositories
pontussk/popstats
Population genetic summary statistics
pontussk/PMDtools
Compute postmortem damage patterns and decontaminate ancient genomes
pontussk/qpAdm_wrapper
A wrapper to estimate admixture proportions and test ancestry models using qpAdm
pontussk/point_heatmap
Plotting statistics on a world map as points with heatmap colors
pontussk/ry_compute
Inferring the biological sex of ancient genomic shotgun samples
pontussk/samremovedup
Removing PCR duplicates based on start and end positions.
pontussk/calico
Estimating DNA contamination
pontussk/fasta_nomissing.py
parse and filter a file of aligned fasta sequences
pontussk/mpileup2consensus.py
Calling haploid genomes from BAM (samtools mpileup input)
pontussk/mpileup_mismatch_pathogen.py
pontussk/samremovedupSE.py
Removing PCR duplicates using only the start position of the mapping coordinates
pontussk/vcf2tped.py
Convert VCF to PLINK tped and tfam.