popgenmethods/SINGER

Inferring mutation times

sylviah23 opened this issue · 2 comments

sylviah23 commented

After converting to tree sequence format, the tables.mutation.time column is empty currently. Does SINGER infer these mutation times and if so, is it possible to add them in to the tree sequence?

YunDeng98 commented

Hi @sylviah23 , the mutation time can be calculated using the average of lower and upper node time, does this work for you?

sylviah23 commented

Hi @YunDeng98, that works, thank you!