Pinned Repositories
defiNETti
defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particular, it is well-suited for population genetic applications.
diCal2
diCal2 infers complex demographic histories from whole-genome sequencing data
LDhelmet
Software package for estimating fine-scale recombination rate.
ldpop
Two locus likelihoods and ARGs under changing population size
lecture_notes
Lecture Notes on Computational and Mathematical Population Genetics
momi
MOran Models for Inference
momi2
Infer demographic history with the Moran model
pyrho
Fast inference of fine-scale recombination rates based on fused-LASSO
SINGER
Sampling and inference of genealogies with recombination
smcpp
SMC++ infers population history from whole-genome sequence data.
popgenmethods's Repositories
popgenmethods/lecture_notes
Lecture Notes on Computational and Mathematical Population Genetics
popgenmethods/smcpp
SMC++ infers population history from whole-genome sequence data.
popgenmethods/momi2
Infer demographic history with the Moran model
popgenmethods/pyrho
Fast inference of fine-scale recombination rates based on fused-LASSO
popgenmethods/SINGER
Sampling and inference of genealogies with recombination
popgenmethods/defiNETti
defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particular, it is well-suited for population genetic applications.
popgenmethods/LDhelmet
Software package for estimating fine-scale recombination rate.
popgenmethods/ldpop
Two locus likelihoods and ARGs under changing population size
popgenmethods/momi
MOran Models for Inference
popgenmethods/diCal2
diCal2 infers complex demographic histories from whole-genome sequencing data
popgenmethods/spectralHMM
A spectral method for inferring selection from time series data
popgenmethods/spectralTDF
spectralTDF is a software program for computing the transition density function of the Wright-Fisher diffusion process in a population of piecewise constant size.