popgenmethods/smcpp

Issues

• Installation recommendations

  #265 opened 6 months ago by ericgonzalezs
  2

• vcf2smc

  #264 opened 7 months ago by Risingsun93
  0

• SMC++ extimate OSError

  #223 opened 3 years ago by zhangzb554
  1

• Why does the SMC++ estimate produce significantly different results when I change the -d parameter?

  #263 opened 7 months ago by caocaoBioInfo
  0

• smcpp.commands.vcf2smc WARNING Multiple entries found at 13 positions; skipped all but the first

  #262 opened 8 months ago by Keerlllws
  0

• --missing-cutoff option is not completed working

  #261 opened 8 months ago by ChenJuiYANG
  0

• Build failed in Python 3.11

  #240 opened a year ago by tcztzy
  4

• How to use docker to deliver tasks instead of running locally

  #260 opened a year ago by KKFFCC
  1

• How to evaluate Ne estimates with different parameters

  #259 opened a year ago by djeffares
  0

• Running smc++ on genome with scaffold level assembly

  #258 opened a year ago by ModiShrushti
  0

• FloatingPointError: divide by zero encountered in log

  #257 opened a year ago by aguilar-gomez
  0

• vcf2smc with csi indexed mask file?

  #256 opened a year ago by mc-er
  0

• FileNotFoundError: [Errno 2] No such file or directory: 'seaborn-ticks'

  #251 opened a year ago by sahwa
  2

• Running about the parameter cv

  #255 opened a year ago by tcd11221
  0

• Please add support for `linux-aarch64` to the Conda package

  #252 opened a year ago by martin-g
  2

• Conda install of smc++ version 0.0.0?

  #253 opened a year ago by dmacguigan
  2

• PermissionError: [Errno 13] could not open variant (vcf) file

  #254 opened a year ago by chenchengaaaaa
  1

• merge multiple groups

  #237 opened a year ago by ARICE-silisi
  1

• mremap_chunk(): invalid pointer

  #241 opened a year ago by zhangrengang
  1

• Cannot detect my simulated bottleneck

  #250 opened 2 years ago by JaneeshBansal
  1

• Can SMC++ analyze samples collected at different sampling times?

  #249 opened a year ago by XiaoleLei
  1

• how to use 'plot.py' to place the legend outside the top right corner of the plot frame or plot the resulting .json files in R?

  #224 opened 3 years ago by yzliu01
  1

• RuntimeError: erroneous average coalescence time

  #248 opened 2 years ago by danrans123
  0

• Questions about SMC++ plotting

  #247 opened 2 years ago by jaurbanChicago
  0

• ValueError: invalid file `b'smc.sorted.recode.vcf.gz'` (mode=`b'r'`) - is it VCF/BCF format

  #229 opened 2 years ago by lnqiao
  1

• assertion error

  #245 opened 2 years ago by ndussex
  0

• docker run smc++: NotImplementedError: seek not implemented in files compressed by method 1

  #244 opened 2 years ago by xgdong
  1

• split --timepoints command is useless

  #243 opened 2 years ago by xiaobaiymq
  0

• different --knots set, different results

  #242 opened 2 years ago by lidanqi1990
  0

• estimate of Watterson theta

  #219 opened 3 years ago by Devashish13
  3

• SMC++ plot | The horizontal coordinate of the image result is incomplete

  #215 opened 3 years ago by suying77
  2

• straight line in Ne across time

  #210 opened 3 years ago by salonso65
  2

• smc++ estimate Error

  #238 opened 2 years ago by lamlitman
  1

• error with new version 1.15.4

  #236 opened 2 years ago by ndussex
  0

• generation time differs

  #232 opened 2 years ago by xuefenfei712
  1

• smc++ simulate function

  #233 opened 2 years ago by chongjing
  0

• vcf2smc Not Recognizing Population Argument

  #231 opened 2 years ago by BirdmanRidesAgain
  0

• strange build failure with recent toolchain

  #225 opened 2 years ago by grahamgower
  0

• Installation Path

  #228 opened 2 years ago by HuangseYuanli
  0

• haploid genome runing

  #222 opened 3 years ago by wushyer
  0

• Feature request: Add support for Linux ARM64

  #218 opened 3 years ago by julien-faye
  4

• smcpp results weired

  #208 opened 3 years ago by Wennie-s
  3

• Composite likelihood: input into estimate

  #217 opened 3 years ago by elizeng
  0

• where to find exact number for effective pop size

  #216 opened 3 years ago by YuanwenGuo
  1

• split time

  #213 opened 3 years ago by pengyan19
  0

• Suggestion: numpy should not be required for setup.py

  #212 opened 3 years ago by vsoch
  0

• most runs not finishing but program acts like they did

  #211 opened 3 years ago by selasphoruskershaw
  0

• Generating a VCF using ONT long-reads?

  #209 opened 3 years ago by sjfleck
  0

• Multiprocessing issue

  #207 opened 3 years ago by Apis-DeLorian
  0

• unknown error "Found array with 0 sample(s) (shape=(0, 1)) while a minimum of 2 is required"

  #206 opened 3 years ago by caoqian96
  0