popgenomics
CNRS researcher at University of Lille (France); Speciation; Population Genomics; Statistical inferences
Lille (France)
Pinned Repositories
ABC_4pop
ABC analysis to investigate speciation by using genomics data from four populations allowing for genomic heterogeneities in Ne and M
ABC_WGD
ABC for polyploids
configFiles
courses
DILS
Demographic Inferences with Linked Selection
DILSmcsnp
version of snpDILS for 1. fastafile 2. only doing model comp.
pNpSdNdS
pNpSdNdS computes exact synonymous and non-synonymous polymorphism
popPhyl_PCA
produces PCA on genotypes from fasta files (popPhyl's ID format)
popPhylABC
Scripts used for ABC analysis with homo- and heterogeneity in Migration rates or/and Effective population sizes
triStyle
Simulator of heterostyly in a metapopulation
popgenomics's Repositories
popgenomics/ABC_4pop
ABC analysis to investigate speciation by using genomics data from four populations allowing for genomic heterogeneities in Ne and M
popgenomics/DILS
Demographic Inferences with Linked Selection
popgenomics/courses
popgenomics/pNpSdNdS
pNpSdNdS computes exact synonymous and non-synonymous polymorphism
popgenomics/popPhyl_PCA
produces PCA on genotypes from fasta files (popPhyl's ID format)
popgenomics/popPhylABC
Scripts used for ABC analysis with homo- and heterogeneity in Migration rates or/and Effective population sizes
popgenomics/triStyle
Simulator of heterostyly in a metapopulation
popgenomics/ABC_WGD
ABC for polyploids
popgenomics/configFiles
popgenomics/DILSmcsnp
version of snpDILS for 1. fastafile 2. only doing model comp.
popgenomics/ABConline
DILS : Demographic Inferences With Linked Selection
popgenomics/ABCprime
ABC by using msprime
popgenomics/deepDILS
popgenomics/DILS_3pop_SNP
modified version of DILS used in Leroy et al. (2021) on Morpho butterflies
popgenomics/DILS_4pop
pipeline for model comparisons and parameter estimates, for 3 alternative topologies involving 4 populations
popgenomics/DILS_4pop_SFS
extension of DILS_4pop using joint 4D SFS
popgenomics/get_N_loci
Subsample N loci to reduce an original (big) fasta file
popgenomics/inbreeding
set of tools to measure inbreeding coefficients from fasta file
popgenomics/markdown-toc
MarkdownTOC(Table Of Contents) Plugin for Visual Studio Code.
popgenomics/pal_CNN
simulator of fossiles
popgenomics/quantiSex
popgenomics/selfABC
an ABC tool to estimate selfing rate from genomic data
popgenomics/selfing_ML
This repository contains a Python script and an R script for estimating and visualizing selfing rates from multilocus sequence data.
popgenomics/simulator_metapop_hermaphrodites
Hermaphroditic metapopulation simulator for the manuscript entitled "Sex allocation evolution in metapopulations"
popgenomics/snpDILS
Like DILS but with SNP data
popgenomics/snpDILS_v2
DILS taking as input file the DADI's input file
popgenomics/talk_museum
popgenomics/talkGDR
popgenomics/testGIT
a tuto to remembrer how to use github
popgenomics/tetete