/get-one2one-orthologues

Fetch 1:1 gene orthologues for two species from Ensembl Compara

Primary LanguageR

Fetch one2one orthologues from Ensembl Compara

This function takes two scientific names (e.g., 'homo_sapiens' and 'mus_musculus') and returns a dataframe of orthologues genes based on the MySQL Ensembl Compara database (version 75).

Dependencies

Requires the following R packages:

  1. RMySQL
  2. glue
  3. dplyr

Usage

human_mouse <- get_one2one_orthologues(homo_sapiens, mus_musculus)