`as.janno()` expects "Individual_ID" instead of "Poseidon_ID"

[TCLamnidis]

> names(output_janno)
 [1] "Poseidon_ID"                   "Collection_ID"                 "Country"                      
 [4] "Site"                          "Location"                      "Longitude"                    
 [7] "Latitude"                      "Date_C14_Labnr"                "Date_BC_AD_Start"             
[10] "Date_BC_AD_Stop"               "Date_BC_AD_Median"             "Date_C14_Uncal_BP"            
[13] "Date_C14_Uncal_BP_Err"         "Date_Type"                     "Nr_Libraries"                 
[16] "Capture_Type"                  "UDG"                           "Library_Built"                
[19] "Damage"                        "Nr_SNPs"                       "Endogenous_DNA"               
[22] "Contamination"                 "Contamination_Err"             "Group_Name"                   
[25] "Genetic_Sex"                   "MT_Haplogroup"                 "Y_Haplogroup"                 
[28] "Source_Tissue"                 "Genotype_Ploidy"               "Data_Preparation_Pipeline_URL"
[31] "Coverage_on_Target_SNPs"       "Genetic_Source_Accession_IDs"  "Primary_Contact" 
             
> output_janno %>% poseidonR::as.janno()
Error in check_if_all_mandatory_columns_present(x) : 
  The janno file lacks the following columns: Individual_ID

> output_janno %>% dplyr::rename("Individual_ID" = "Poseidon_ID") %>% poseidonR::as.janno()
## Does not complain about that specific issue with my output_janno

> packageVersion("poseidonR")
[1] ‘0.7.0’

[nevrome]

I can not reproduce that 🤔.

Can you check what poseidonR:::janno_mandatory_columns gives you? When and how did you install the package?

[TCLamnidis]

I followed the instructions on the website (using remotes::install_github). Updating the package was the first thing I tried, when I got the error.

> poseidonR:::janno_mandatory_columns
[1] "Individual_ID" "Group_Name"    "Genetic_Sex" 

[TCLamnidis]

I just realised that although packageVersion says 0.7.0 my RStudio package list actually says 0.5.0 😅
Not sure how that has happened.

[TCLamnidis]

forcing reinstallation of the package and detaching/reattaching seems to have fixed this issue.