ppreshant
I'm a synthetic biologist in Grad school at Rice University. I love clean data visualization and use R for data analysis and regular plotting of data
Rice UniversityHouston
Pinned Repositories
ASV-OTU-debate
dadasnake
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
flopr
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
flow_cytometry
analyzing .fcs2.0/3.0 files with semi-automated gating and plotting
general-scripts
Small ad-hoc scripts. Ex - parsing and plotting data from another paper.
Growth-curve-analysis
To analyse growth curve (OD) of bacteria grown in 96 well plates on a shaking plate reader - Shamoo Lab
Integral-feedback
Integral feedback based chemical control networks to stabilize biological networks
plate-reader-plotting
Automated processing of plate reader data: static and time-course measurements. Normalize fluorescence to OD, make plots
qPCR-analysis
Takes excel file output from qPCR (Quantstudio3, ABI) and sample labels. Optionally analyzes standard curves and plots CT, Tms and absolute copies
ppreshant's Repositories
ppreshant/qPCR-analysis
Takes excel file output from qPCR (Quantstudio3, ABI) and sample labels. Optionally analyzes standard curves and plots CT, Tms and absolute copies
ppreshant/plate-reader-plotting
Automated processing of plate reader data: static and time-course measurements. Normalize fluorescence to OD, make plots
ppreshant/flopr
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
ppreshant/flow_cytometry
analyzing .fcs2.0/3.0 files with semi-automated gating and plotting
ppreshant/ASV-OTU-debate
ppreshant/dadasnake
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
ppreshant/general-scripts
Small ad-hoc scripts. Ex - parsing and plotting data from another paper.
ppreshant/Growth-curve-analysis
To analyse growth curve (OD) of bacteria grown in 96 well plates on a shaking plate reader - Shamoo Lab
ppreshant/Integral-feedback
Integral feedback based chemical control networks to stabilize biological networks
ppreshant/ISAR-RICE
Contains CSS, HTML and source files for ISAR website (Indian Students at Rice)
ppreshant/LoveIt
❤️A clean, elegant but advanced blog theme for Hugo 一个简洁、优雅且高效的 Hugo 主题
ppreshant/memory-microbe
Modelling integrase based memory in bacterial biosensors
ppreshant/Naomi_RAPID_figs
Figures for RAPID paper
ppreshant/Neural-Machine-Learning-502
Solutions to Homework Assignments of NML 502 Course
ppreshant/NML-homeworks---Prash
ppreshant/OpenGene.jl
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
ppreshant/ppreshant.github.io
My personal blog on matters of science, society and everything in the middle
ppreshant/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
ppreshant/R_chip_analysis
ppreshant/Servo_motor_raspberrypi
Modification of Adafruit servo motor files for raspberry pi hat to run two servo motors for driving syringe pump. The pumps were used to produce droplets in a microfluidic device in this example. Codes C/O Shamoo Lab/Rice University. Cloned from " "
ppreshant/ubuntu-wifi-troubleshooting
Documenting all steps taken and literature for troubleshooting wifi issues in dual boot Ubuntu 20 and Windows 10 Dell XPS 15 9500
ppreshant/Xiaodong_plots
Plotting publication quality graphics from excel sheet tabular data