A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).
Name | NeuroKit |
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Run the following:
pip install https://github.com/neuropsychology/NeuroKit.py/zipball/master
Not working? Check this out!
- You need some help? You found a bug? You would like to request a new feature?
Just open an issue
☺️ - Want to add a feature? Correct a bug? You're more than welcome to contribute! Check this page to see how to submit your changes on github.
- Tutorials
- Biosignals processing
- M/EEG processing
- API Documentation
This package provides a high level integration of complex statistical routines for researchers and clinicians with not much experience in programming, statistics or signal theory.
- M/EEG
read_eeg()
: Read and convert many EEG and MEG files to anmne.io.Raw
object- Preprocessing: Under development
- ERP: Under development
- Time/Frequency: Under development
- Microstates: Under development
- Biosignals
read_acqknowledge()
: Load and convert Biopac:copyright:'s AcqKnowledge files to a dataframeecg_process()
: Extract ECG features- Heart Rate
- Heart rate variability (HRV) - time, frequency and nonlinear domains
- Cardiac Cycles - R peaks, RR intervals, P, Q, T Waves, ...
- Cardiac Phase (systole/diastole)
- Signal quality evaluation
- Respiratory sinus arrhythmia (RSA) - P2T method
- Complexity (multiscale entropy, fractal dimensions, ...)
rsp_process()
: Extract Respiratory features- Respiratory rate and variability
- Respiratory phase (inspiration/expiration)
- Respiratory cycles characteristics (onsets, length, ...)
eda_process()
: Extract Electrodermal Activity (EDA)- Tonic and phasic components using the new cvxEDA algorithm (Greco, 2016)
- Skin Conductance Responses (SCR) onsets, peaks, amplitudes, latencies, recovery times, ...
emg_process()
: Extract EMG features- Pulse onsets
- Signal
complexity()
: Extract complexity/chaos indices, such as values of entropy (Shannon's, Sample and Multiscale), fractal dimension, Hurst and Lyapunov exponents and more
- Statistics
z_score()
: Normalize (scale and reduce) variablesfind_outliers()
: Identify outliersdprime()
: Computes Signal Detection Theory (SDT) parameters (d', c, beta, a', b''d)
- Miscellaneous
BMI()
: Compute the traditional body mass index (BMI), the new BMI, the Body Fat Percentage (BFP) and their interpretation
You can cite NeuroKit with the following:
Makowski, D. (2016). NeuroKit: A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).
Memory and Cognition Lab' Day, 01 November, Paris, France
Note: The authors do not give any warranty. If this software causes your keyboard to blow up, your brain to liquefy, your toilet to clog or a zombie plague to leak, the authors CANNOT IN ANY WAY be held responsible.
Note that important credits go to the developpers of the many packages upon which NeuroKit is built. Those include mne, bioSPPy, hrv, bioread... Make sure you cite them!