/BartServer

A simple python Gadget to send data to BART on a remote container from MATLAB

Primary LanguageMATLAB

highly Experimental stage(Probably Forever!)

Descrition

Toy project to send time consuming BART command like ecalib to gadgetron Server from MATLAB(Windows).

Server Side:remote gadgetron Setup

Experimental Docker container file has to be compiled.

cd docker
Docker build -t gadgetron_bart:devel .

docker save and load image

docker save mynewimage > gadgetron_bart.tar 
scp gadgetron_bart user@192.168.2.1:/home/user
docker load < gadgetron_bart.tar

start the container: with ecalib.py on the gadgetron python path

docker run --rm -ti --net=host --volume /home/meduser/ecalib:/usr/local/share/gadgetron/python a40abc

at the moment we need to set TOOLBOX_PATH and start gadgetron manually while running the container

export TOOLBOX_PATH=/opt/code/bart/
gadgetron -p 9020

Ideally this should be done in dockerfile.

Client Side : windows

now only ecalib is supported now.

See matalb\demo.m to get started!.

what it does?

The calibration data is Encapsulated into a ISMRMRD data file(h5) with BART command ( see matlab\calib2ismrmrd.m ) and sent to the gadgetron container we built before. You can also execute the system call on a command prompt to continue using MATLAB!

gadgetron_ismrmrd_client.exe -f Calibdata.h5 -C ecalib.xml -a 192.168.2.1 -p 9020 -o test1out.h5