DEvis

DEvis is a powerful, integrated solution for the analysis of differential expression data. This package includes an array of tools for manipulating and aggregating data, as well as a wide range of customizable visualizations, and project management functionality that simplify RNA-Seq analysis and provide a variety of ways of exploring and analyzing data.

Publication

The DEvis paper can be found here.

Price, A., Caciula, A., Guo, C., Lee, B., Morrison, J., Rasmussen, A., Lipkin, W.I., Jain, K. (2019). DEvis: an R package for aggregation and visualization of differential expression data. BMC Bioinformatics, 20(1), 110. https://doi.org/10.1186/s12859-019-2702-z

Installation:

DEvis is now available through the CRAN repository.

install.packages("DEVis")

Manual Installation:

If using OS X, please ensure that you are using the most up to date version of xcode.

Instructions for how to update xcode.

#Install DESeq2 dependency from bioconductor.
source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")

#Install devtools to allow installation from GitHub
if (!require("devtools")) install.packages("devtools")

#Install DEvis from GitHub repository.
devtools::install_github("price0416/DEvis/DEvis")

#Load the package.
library(DEVis)

Documentation:

For a complete usage tutorial, see the vignette.

For technical specifications, see the DEvis manual.