Pinned Repositories
ebook-website
Main website for shared ebook materials
MonoPhy
R package to explore monophyly
msa_cons_blast
This Python program compiles consensus from original MSA. In order, you will: transform FASTQ to FASTA - filter data based on quality control and length - align MSA [using MAFFT by penalizing gappy regions] - generate consensus FASTA, BLAST consensus returning top 10 matches (based on query cover and similarity) from NCBI
PartitionUCE
partitioning schemes for UCE datasets
probstrodolfo's Repositories
probstrodolfo/ebook-website
Main website for shared ebook materials
probstrodolfo/MonoPhy
R package to explore monophyly
probstrodolfo/msa_cons_blast
This Python program compiles consensus from original MSA. In order, you will: transform FASTQ to FASTA - filter data based on quality control and length - align MSA [using MAFFT by penalizing gappy regions] - generate consensus FASTA, BLAST consensus returning top 10 matches (based on query cover and similarity) from NCBI
probstrodolfo/PartitionUCE
partitioning schemes for UCE datasets
probstrodolfo/fasta_merger
Python script helping concatenating FASTA alignments when dealing with different OTUs
probstrodolfo/probstrodolfo.github.io
probstrodolfo/topQ
Little script to pull, in order, reads based on Q-scores from FASTQ files