ENCODE Long read RNA-seq pipeline
OVERVIEW
This is the ENCODE-DCC Long read RNA-seq pipeline. This pipeline can handle data from both PacBio and Oxford Nanopore platforms. Pipeline does read alignment, corrects for mismatches, microindels and non-canonical splice junctions and then provides quantitations and QC-metrics.
INSTALLATION
Installation instructions here
HOWTO
Howto guides here
INPUTS
Description of the pipeline inputs
OUTPUTS
Description of the pipeline outputs
REFERENCE
Reference here