Pinned Repositories
aifi-swanson-teaseq
Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization
analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
AnnotationHub
Client for the Bioconductor AnnotationHub web resource
atac-seq-pipeline
ENCODE ATAC-seq pipeline
awesome-10x-genomics
List of tools and resources related to the 10x Genomics GEMCode/Chromium system
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
awesome-multi-omics
List of software packages for multi-omics analysis
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bam-readcount
count DNA sequence reads in BAM files
bfx-workshop
procha2's Repositories
procha2/single-cell-bioinformatics
Course material in notebook format for learning about single cell bioinformatics methods
procha2/GenomeBrowserCourse
http://tinyurl.com/cruk-browsers
procha2/r-intermediate
An intermediate level course on the R statistical programming language
procha2/ngs-in-bioc
A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
procha2/cruk-bioinf-sschool
http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool