programerkotik
Young biologist pretending to be an informatician.
Leibniz Institute for NeurobiologyMagdeburg, Germany
Pinned Repositories
blobs-counts
Script calculate the amount of sperm cells present in one sample. It can be used for analysis of dead and live ratios for sperm cells. Data are supposed to come from spinning disk microscope.
Cancer-Genomics-Data-Analysis
Cancer Genomics Data Analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal of the exercise is to generate a read-depth plot for human cancer sample.
chemotaxis-simulation
chromatin-volume-analysis
The project aims to perform semantic segmentation of chromatin subtypes in nuclei, discriminating chromocenters, perinuclear, perinucleolar, and nucleoplasmatic chromatin. The result is to be used for volume analysis.
colocalization-analysis
This is a function created for biological analysis of colocalizing signals in microscopy.
Differential-Gene-Expression-Analysis
Differential gene expression analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal is to perform analysis of RNA-Seq data.
etraChallenge_ICS_Solution
This repository contains Python code for analyzing saccade patterns using eye tracking data.
IKV2-Final-Project
Analysis of the neural simulation data from NEST Simulator. The following analysis is part of solution for the semestral project for Informatics and Cognitive Science II from Faculty of Math and Physics of Charles University in Prague.
NMAI059-2022
thesis-2023-travelling-waves
A thesis project conducted in 2022/2023 at the Computational Systems Neuroscience Group (CSNG) of Charles University's Faculty of Mathematics and Physics. The project aims to study relationships between ECoG and electrode signals in the visual cortex of cats.
programerkotik's Repositories
programerkotik/etraChallenge_ICS_Solution
This repository contains Python code for analyzing saccade patterns using eye tracking data.
programerkotik/thesis-2023-travelling-waves
A thesis project conducted in 2022/2023 at the Computational Systems Neuroscience Group (CSNG) of Charles University's Faculty of Mathematics and Physics. The project aims to study relationships between ECoG and electrode signals in the visual cortex of cats.
programerkotik/blobs-counts
Script calculate the amount of sperm cells present in one sample. It can be used for analysis of dead and live ratios for sperm cells. Data are supposed to come from spinning disk microscope.
programerkotik/Cancer-Genomics-Data-Analysis
Cancer Genomics Data Analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal of the exercise is to generate a read-depth plot for human cancer sample.
programerkotik/chemotaxis-simulation
programerkotik/chromatin-volume-analysis
The project aims to perform semantic segmentation of chromatin subtypes in nuclei, discriminating chromocenters, perinuclear, perinucleolar, and nucleoplasmatic chromatin. The result is to be used for volume analysis.
programerkotik/colocalization-analysis
This is a function created for biological analysis of colocalizing signals in microscopy.
programerkotik/Differential-Gene-Expression-Analysis
Differential gene expression analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal is to perform analysis of RNA-Seq data.
programerkotik/IKV2-Final-Project
Analysis of the neural simulation data from NEST Simulator. The following analysis is part of solution for the semestral project for Informatics and Cognitive Science II from Faculty of Math and Physics of Charles University in Prague.
programerkotik/NMAI059-2022
programerkotik/Sars-CoV-2-Lineage-Determination
Sars-CoV-2 Lineage Determination exercise for the course Analytical Methods in Cancer Genomics 2023
programerkotik/viral_particles_distribution_in_nucleus
In this project the goal is to measure distance of all protein particles from lamin signal, show if there can be any possible interaction between these particles and lamin.