projectoriented
An avid table-top RPG gamer trying to make a difference in the world through precision medicine. Bioinformatics, MSc from Uppsala Universitet 😊
Seattle, WA
Pinned Repositories
advent-of-code
anomaly
A pipeline to detect aberrant RNA events for clinical diagnostics in rare disease
ava_svbyeye
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
back-reference-qc
Detect outlier long-reads by using its Illumina counterpart.
bio-utils
A place where I keep scripts until I have enough to develop them into tools
configs
Config files used to define parameters specific to compute environments at different Institutions
continuous-methylation
A Snakemake pipeline for methylation analysis using long-read sequencing (third generation).
cyclic-di-gmp
test out various statistical methods to identify snps associated with cyclic-di-gmp
methylink
CLI tool to link methylation tags between two files
projectoriented's Repositories
projectoriented/anomaly
A pipeline to detect aberrant RNA events for clinical diagnostics in rare disease
projectoriented/back-reference-qc
Detect outlier long-reads by using its Illumina counterpart.
projectoriented/continuous-methylation
A Snakemake pipeline for methylation analysis using long-read sequencing (third generation).
projectoriented/methylink
CLI tool to link methylation tags between two files
projectoriented/advent-of-code
projectoriented/ava_svbyeye
projectoriented/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
projectoriented/bio-utils
A place where I keep scripts until I have enough to develop them into tools
projectoriented/configs
Config files used to define parameters specific to compute environments at different Institutions
projectoriented/containers
A place where I hold container definition files.
projectoriented/contiguous-X
Attempt to build contiguous X with long reads
projectoriented/dotfiles
A place to setup personal OS settings 🤖
projectoriented/drop
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
projectoriented/dss-test
A place to hold all the testing ideas for finding differential methylation regions
projectoriented/fix-sex-chrom
Ad-hoc solution to re-align sex chromosomes in male dual assemblies
projectoriented/flagger-smk
A Snakemake copy of WDL Flagger
projectoriented/HiFiAdapterFilt
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
projectoriented/hugo-theme-cactus
Cactus theme for hugo
projectoriented/LDSA
A repository for Large Dataset Scientific Applications class at UU in the VT-2020 term. It's a class where we learn to utilize cloud-based applications and tools for scientific computing.
projectoriented/minimiro
projectoriented/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
projectoriented/ONT_pipelines
projectoriented/projectoriented.github.io
:building_construction: Personal website
projectoriented/RareDisease_RNA_workflow
projectoriented/rosalind-problems
A place to collaboratively solve rosalind problems
projectoriented/rucksack
projectoriented/sfari-data-deposition
A one-off repo to share re-organization script.
projectoriented/test-datasets
Test data to be used for automated testing with the nf-core pipelines
projectoriented/tock-reserve
Script for making reservations on Tock
projectoriented/tools
Python package with helper tools for the nf-core community.