proteins247

Pinned Repositories

evolutionary_dynamics
Code for simulating evolution. Used for studies of cotranslational protein folding evolution.
Language:C++10
latPack
Lattice protein simulation suite.
Language:C++10
SodaPop
Forward-time simulator for large-scale population dynamics and molecular evolution.
Language:C++11
dbfold
A Python library to analyze equilibrium and unfolding simulations to compute protein folding rates from detailed balance
Language:Jupyter Notebook00
for_topology
scripts and data to analyze E. coli proteins for cotranslational folding
Language:Python00
for_topology2
sharing some data
Language:Python00
MCPU
Monte Carlo Protein Unfolding software from the Shakhnovich Group
Language:C00
proteomevis_scripts
scripts that manage ProteomeVis data
Language:Python00
ProteinMPNN
Code for the ProteinMPNN paper
Language:Jupyter Notebook1k305
pcmsolver
An API for the Polarizable Continuum Model
Language:C++3321

proteins247's Repositories

proteins247/dbfold
A Python library to analyze equilibrium and unfolding simulations to compute protein folding rates from detailed balance
Language:Jupyter Notebook
proteins247/for_topology2
sharing some data
Language:Python
proteins247/evolutionary_dynamics
Code for simulating evolution. Used for studies of cotranslational protein folding evolution.
Language:C++1
proteins247/for_topology
scripts and data to analyze E. coli proteins for cotranslational folding
Language:Python
proteins247/MCPU
Monte Carlo Protein Unfolding software from the Shakhnovich Group
Language:C
proteins247/latPack
Lattice protein simulation suite.
Language:C++1
proteins247/proteomevis_scripts
scripts that manage ProteomeVis data
Language:Python
proteins247/SodaPop
Forward-time simulator for large-scale population dynamics and molecular evolution.
Language:C++11