psathyrella

Pinned Repositories

airr-formats
AIRR Community Data Models and File Formats
Language:Thrift0 1 00
bcr-phylo-benchmark
Language:Jupyter Notebook0 1 01
BDMS
A tree simulator for birth-death-mutation-sampling processes
Language:Python00
bin
Language:Python0 2 00
bpp-core
Bio++ Core Library
Language:C++0 1 00
bpp-master-20140414
Clone on bio++ binaries and headers... because I haven't managed to the development branch to install properly
Language:C++0 1 00
ham
The fantabulous HMM compiler
Language:C++10 3 112
partis
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
Language:C++57 9 29334
psathyrella.github.io
Language:HTML1 2 00
python-noaa
Python Bindings to the NOAA National Digital Forecast Database (NDFD)
Language:Python1 1 00

psathyrella's Repositories

psathyrella/partis
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
Language:C++57 9 29334
psathyrella/ham
The fantabulous HMM compiler
Language:C++10 3 112
psathyrella/psathyrella.github.io
Language:HTML1 2 00
psathyrella/python-noaa
Python Bindings to the NOAA National Digital Forecast Database (NDFD)
Language:Python1 1 00
psathyrella/airr-formats
AIRR Community Data Models and File Formats
Language:Thrift0 1 00
psathyrella/bcr-phylo-benchmark
Language:Jupyter Notebook0 1 01
psathyrella/BDMS
A tree simulator for birth-death-mutation-sampling processes
Language:Python00
psathyrella/bin
Language:Python0 2 00
psathyrella/bpp-core
Bio++ Core Library
Language:C++0 1 00
psathyrella/bpp-master-20140414
Clone on bio++ binaries and headers... because I haven't managed to the development branch to install properly
Language:C++0 1 00
psathyrella/bpp-phyl
Bio++ Phylogenetic Library
Language:C++0 1 00
psathyrella/bpp-popgen
Bio++ Population Genetics Library
Language:C++1 0
psathyrella/bpp-seq
Bio++ Sequence Library
Language:C++0 0
psathyrella/bppsuite
Bio++ Program Suite
Language:C++1 0
psathyrella/cft
Clonal family tree
Language:Python1 0
psathyrella/chimera-find
simple tool for evaluating the prevalence of chimeric sequences in B cell receptor NGS data
Language:Python1 0
psathyrella/dgex
Language:R1 0
psathyrella/dscripts
wrapper scripts to facilitate running partis on real data
Language:Python2 0
psathyrella/ecgtheow
Ancestral lineage reconstruction using BEAST or RevBayes
Language:Python1 0
psathyrella/eigen-git-mirror
THIS MIRROR IS DEPRECATED -- New url: https://gitlab.com/libeigen/eigen
Language:C++1 0
psathyrella/emacs.d
Language:Emacs Lisp1 0
psathyrella/HILARy
Python package for inference of lineages in antibody repertoires
Language:Python
psathyrella/identifier
Language:Python2 0
psathyrella/ig-germlines
1 0
psathyrella/igblast
Language:TeX0 0
psathyrella/intronic-germlines
2 0
psathyrella/selection-metric-comments
2 9
psathyrella/smctc
Yet Another Fork
Language:C++2 0
psathyrella/weatherhistory
1 0
psathyrella/weatherscraper
Language:Python2 11