Pinned Repositories
bridges2-examples
Different job examples running on Bridges-2
ml4docs
Machine Learning for Docs projects developed in collaboration with Prof. Raja Adal at Pitt.
neocortex-public
psync
Parallelized rsync-like clone
singularity-guppy-gpu
Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.
singularity-homer
HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
singularity-lazygit
Simple terminal UI for git commands
singularity-rclone
Rclone is a command line program to manage files on cloud storage. It is a feature rich alternative to cloud vendors' web storage interfaces.
slash2
SLASH2 file system
zfs-fuse
zfs-fuse maintanence clone
Pittsburgh Supercomputing Center's Repositories
pscedu/bridges2-examples
Different job examples running on Bridges-2
pscedu/neocortex-public
pscedu/ml4docs
Machine Learning for Docs projects developed in collaboration with Prof. Raja Adal at Pitt.
pscedu/psc-wpdocs
WeDocs repo for documentation on PSC.edu
pscedu/singularity-bat
A cat(1) clone with syntax highlighting and Git integration.
pscedu/singularity-vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
pscedu/apptainer
Just a list of Apptainer definition files maintained by the Biomed Applications Group
pscedu/apptainer-asciigenome
pscedu/apptainer-bat
About A cat(1) clone with syntax highlighting and Git integration.
pscedu/apptainer-chalk-cli
About Terminal string styling done right
pscedu/apptainer-lowcharts
lowcharts is meant to be used in those scenarios where we have numerical data in text files that we want to display in the terminal to do a basic analysis.
pscedu/apptainer-octave
About GNU Octave is software featuring a high-level programming language, primarily intended for numerical computations
pscedu/apptainer-singularityce
Singularity Community Edition is 100% open source, BSD licensed software available for free.
pscedu/ml4docs-automation
pscedu/practical-intro-to-apptainer
Exercises for the "Practical Intro to Apptainer in Bridges-2"
pscedu/singularity
Just a list of Singularity definition files maintained by the Biomed Applications Group
pscedu/singularity-beast2
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.
pscedu/singularity-canu
pscedu/singularity-circos
Circos is a software package for visualizing data and information.
pscedu/singularity-dua
View disk space usage and delete unwanted data, fast.
pscedu/singularity-dust
du + rust = dust. Like du but more intuitive.
pscedu/singularity-filtlong
Quality filtering tool for long reads
pscedu/singularity-gnuplot
Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms.
pscedu/singularity-graphviz
Graphviz is a package of open-source tools initiated by AT&T Labs Research for drawing graphs specified in DOT language scripts.
pscedu/singularity-guppy
Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.
pscedu/singularity-imagemagick
Use ImageMagick® to create, edit, compose, or convert digital images.
pscedu/singularity-nanoplot
Plotting scripts for long read sequencing data
pscedu/singularity-pandoc
Pandoc is a free and open-source document converter, widely used as a writing tool and as a basis for publishing workflows.
pscedu/singularity-porechop
Adapter trimmer for Oxford Nanopore reads
pscedu/singularity-vim
Vim is a highly configurable text editor built to make creating and changing any kind of text very efficient.