Pinned Repositories
contiguator
A bacterial genomes finishing tool for structural insights on draft genomes - Now in a Docker
docker-stacks
Stacks is a software pipeline for building loci from short-read sequences - Now in a Docker
genetic-mapper
SVG Genetic Map Drawer
lamp-denv
Scripts and tools used to develop one-step real-time RT-LAMP assays for specific detection of dengue virus.
lamp-virus
Pipeline to develop one-step real-time RT-LAMP assays for specific detection of virus
lava-dna
LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)
mkssl
Shell script to Create a Certificate Authority and Certificates with OpenSSL
ora
Olfactory Receptor family Assigner (bioperl module)
radmap
Analyse RAD-tags and generate the Genetic Map with GWAS
scholar.py
A parser for Google Scholar, written in Python
pseudogene's Repositories
pseudogene/lava-dna
LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)
pseudogene/genetic-mapper
SVG Genetic Map Drawer
pseudogene/radmap
Analyse RAD-tags and generate the Genetic Map with GWAS
pseudogene/lamp-virus
Pipeline to develop one-step real-time RT-LAMP assays for specific detection of virus
pseudogene/ora
Olfactory Receptor family Assigner (bioperl module)
pseudogene/docker-stacks
Stacks is a software pipeline for building loci from short-read sequences - Now in a Docker
pseudogene/lamp-denv
Scripts and tools used to develop one-step real-time RT-LAMP assays for specific detection of dengue virus.
pseudogene/mkssl
Shell script to Create a Certificate Authority and Certificates with OpenSSL
pseudogene/scholar.py
A parser for Google Scholar, written in Python
pseudogene/busco-docker
Busco in a Docker
pseudogene/contiguator
A bacterial genomes finishing tool for structural insights on draft genomes - Now in a Docker
pseudogene/faststructure-docker
Docker image to run fastSTRUCTURE (Raj et al. 2014)
pseudogene/fish_pedigree
Pedigree Chromosome Drawer
pseudogene/gridref
Convert Irish/British Grid Reference points to WGS84
pseudogene/irishgrid
Irish Grid Mapping System
pseudogene/lice-mitochondria
Scripts and tools used to analyse mitochondrial sequence variations between to strain of sea-lice (Lepeophtheirus salmonis)
pseudogene/rad-scripts
Various RAD-seq related scripts
pseudogene/ratt
RATT: Rapid Annotation Transfer Tool (Wellcome Trust Sanger Institute)
pseudogene/uniprime
A workflow-based platform for improved Universal Primer design
pseudogene/vibrio-tnseq
Tn-seq pipeline for Vibrio sp.
pseudogene/virus_genomes
Collect Virus genomes from "NCBI assembly" database (internal)
pseudogene/aquaexcel
Introductory Bioinformatic Course to Sequencing Data Processing
pseudogene/aqupgp3-workshops
pseudogene/Bio-InterProScanWrapper
pseudogene/bioinf-lecture
Jupyter Notebook demonstrating a basic transcriptomic analysis
pseudogene/Corrochano-Fraile_et_al_2023
This companion repository records, in a reproducible manner, all of the steps taken when assessing the performance of the method presented in Corrochano-Fraile et al. 2023.
pseudogene/pedigree
Chromosome mapper for pedigree
pseudogene/qdd-docker
User-friendly computer program for microsatellite selection and primer design revisited - Now in a Docker
pseudogene/ra
Assembler for raw de novo genome assembly of long uncorrected reads.