- signal_hsmm_nonparametricMB.R - working algorithm
- pub_pos_train.txt - training data
- pub_pos_test.txt - test data (signal peptides)
- pub_neg_test.txt - test data (without signal peptides)
program for exploring properties of signal peptides.
functions.R - all important functions procedures.R - current training and test procedure
Requirements:
- dhmm package https://github.com/sobek44/dhmm (load by library(hsmm))
Other stuff:
- aagui - package for aminoacid clusterization https://github.com/michbur/aagui