/pyre2

Python wrapper for RE2

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

pyre2

pyre2 is a Python extension that wraps Google's RE2 regular expression library.

This version of pyre2 is similar to the one you'd find at facebook's github repository except that the stated goal of this version is to be a drop-in replacement for the re module.

The stated goal of this module is to be a drop-in replacement for re. My hope is that some will be able to go to the top of their module and put:

try:
    import re2 as re
except ImportError:
    import re

That being said, there are features of the re module that this module may never have. For example, RE2 does not handle lookahead assertions ((?=...)). For this reason, the module will automatically fall back to the original re module if there is a regex that it cannot handle.

However, there are times when you may want to be notified of a failover. For this reason, I'm adding the single function set_fallback_notification to the module. Thus, you can write:

try:
    import re2 as re
except ImportError:
    import re
else:
    re.set_fallback_notification(re.FALLBACK_WARNING)

And in the above example, set_fallback_notification can handle 3 values: re.FALLBACK_QUIETLY (default), re.FALLBACK_WARNING (raises a warning), and re.FALLBACK_EXCEPTION (which raises an exception).

To install, you must first install the prerequisites:

  • The re2 library from Google
  • The Python development headers (e.g. sudo apt-get install python-dev)
  • A build environment with g++ (e.g. sudo apt-get install build-essential)
  • Cython 0.20+ (pip install cython)

After the prerequisites are installed, you can install as follows:

$ git clone git://github.com/andreasvc/pyre2.git
$ cd pyre2
$ make install

(or make install3 for Python 3)

Python bytes and unicode strings are fully supported, but note that RE2 works with UTF-8 encoded strings under the hood, which means that unicode strings need to be encoded and decoded back and forth. There are two important factors:

  • whether a unicode pattern and search string is used (will be encoded to UTF-8 internally)
  • the UNICODE flag: whether operators such as \w recognize Unicode characters.

To avoid the overhead of encoding and decoding to UTF-8, it is possible to pass UTF-8 encoded bytes strings directly but still treat them as unicode:

In [18]: re2.findall(u'\w'.encode('utf8'), u'Mötley Crüe'.encode('utf8'), flags=re2.UNICODE)
Out[18]: ['M', '\xc3\xb6', 't', 'l', 'e', 'y', 'C', 'r', '\xc3\xbc', 'e']
In [19]: re2.findall(u'\w'.encode('utf8'), u'Mötley Crüe'.encode('utf8'))
Out[19]: ['M', 't', 'l', 'e', 'y', 'C', 'r', 'e']

However, note that the indices in Match objects will refer to the bytes string. The indices of the match in the unicode string could be computed by decoding/encoding, but this is done automatically and more efficiently if you pass the unicode string:

>>> re2.search(u'ü'.encode('utf8'), u'Mötley Crüe'.encode('utf8'), flags=re2.UNICODE)
<re2.Match object; span=(10, 12), match='\xc3\xbc'>
>>> re2.search(u'ü', u'Mötley Crüe', flags=re2.UNICODE)
<re2.Match object; span=(9, 10), match=u'\xfc'>

Finally, if you want to match bytes without regard for Unicode characters, pass bytes strings and leave out the UNICODE flag (this will cause Latin 1 encoding to be used with RE2 under the hood):

>>> re2.findall(br'.', b'\x80\x81\x82')
['\x80', '\x81', '\x82']

Performance is of course the point of this module, so it better perform well. Regular expressions vary widely in complexity, and the salient feature of RE2 is that it behaves well asymptotically. This being said, for very simple substitutions, I've found that occasionally python's regular re module is actually slightly faster. However, when the re module gets slow, it gets really slow, while this module buzzes along.

In the below example, I'm running the data against 8MB of text from the colossal Wikipedia XML file. I'm running them multiple times, being careful to use the timeit module. To see more details, please see the performance script.

Test Description # total runs re time(s) re2 time(s) % re time regex time(s) % regex time
Findall URI|Email Find list of '([a-zA-Z][a-zA-Z0-9]*)://([^ /]+)(/[^ ]*)?|([^ @]+)@([^ @]+)' 2 6.262 0.131 2.08% 5.119 2.55%
Replace WikiLinks This test replaces links of the form [[Obama|Barack_Obama]] to Obama. 100 4.374 0.815 18.63% 1.176 69.33%
Remove WikiLinks This test splits the data by the <page> tag. 100 4.153 0.225 5.43% 0.537 42.01%

Feel free to add more speed tests to the bottom of the script and send a pull request my way!

The tests show the following differences with Python's re module:

  • The $ operator in Python's re matches twice if the string ends with \n. This can be simulated using \n?$, except when doing substitutions.
  • pyre2 and Python's re behave differently with nested and empty groups; pyre2 will return an empty string in cases where Python would return None for a group that did not participate in a match.

Please report any further issues with pyre2.

You can file bug reports on GitHub, or contact the author: Mike Axiak contact page.

If you would like to help, one thing that would be very useful is writing comprehensive tests for this. It's actually really easy:

  • Come up with regular expression problems using the regular python 're' module.
  • Write a session in python traceback format Example.
  • Replace your import re with import re2 as re.
  • Save it as a .txt file in the tests directory. You can comment on it however you like and indent the code with 4 spaces.

Though I ripped out the code, I'd like to thank David Reiss and Facebook for the initial inspiration. Plus, I got to gut this readme file!

Moreover, this library would of course not be possible if not for the immense work of the team at RE2 and the few people who work on Cython.