pvdam3

bioinformatician @ Genetwister Technologies (Wageningen, the Netherlands)

Genetwister TechnologiesWageningen, the Netherlands

Pinned Repositories

bioassay_plotting
R plotting for bioassays: fresh weight and disease index
Language:R0 1 00
ete3_plottree
Visualize a phylogenetic tree from RAxML output
Language:Python0 1 10
FoEC
Fusarium oxysporum effector clustering (FoEC) is a pipeline to identify candidate effector genes in a set of F. oxysporum genomes and apply hierarchical clustering on the presence-absence pattern of these genes.
Language:Python2 1 53
FoEC2
Fusarium oxysporum Effector Clustering version 2
Language:Python4 3 21
GO_term_overrepresentation
Find overrepresented GO terms on a chromosome compared to the rest of the genome
0 1 00
lowercaseintronsbegone
Remove lowercase introns from a fastafile
Language:Python00

pvdam3/FoEC2
Fusarium oxysporum Effector Clustering version 2
Language:Python4 3 21
pvdam3/FoEC
Fusarium oxysporum effector clustering (FoEC) is a pipeline to identify candidate effector genes in a set of F. oxysporum genomes and apply hierarchical clustering on the presence-absence pattern of these genes.
Language:Python2 1 53
pvdam3/bioassay_plotting
R plotting for bioassays: fresh weight and disease index
Language:R0 1 00
pvdam3/ete3_plottree
Visualize a phylogenetic tree from RAxML output
Language:Python0 1 10
pvdam3/GO_term_overrepresentation
Find overrepresented GO terms on a chromosome compared to the rest of the genome
0 1 00
pvdam3/lowercaseintronsbegone
Remove lowercase introns from a fastafile
Language:Python00