Pinned Repositories
btr
test if your chosen set of variables is better than a randomly chosen set of variables
dmb
indra
Integrated Network and Dynamical Reasoning Assembler
indra_pathway_map
resolve2xe
convert Resolve biosciences outputs to xenium-like format that can be read by
pvtodorov's Repositories
pvtodorov/resolve2xe
convert Resolve biosciences outputs to xenium-like format that can be read by
pvtodorov/btr
test if your chosen set of variables is better than a randomly chosen set of variables
pvtodorov/dmb
pvtodorov/19-BMI-brain-genesettests
code for geneset tests for BMI brain paper
pvtodorov/blah
pvtodorov/blahs
pvtodorov/blowfish
dda project
pvtodorov/CELLECT
CELLECT (CELL-type Expression-specific integration for Complex Traits)
pvtodorov/CELLEX
CELLEX (CELL-type EXpression-specificity)
pvtodorov/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
pvtodorov/ClusterMap
ClusterMap for multi-scale clustering analysis of spatial gene expression
pvtodorov/cooccurrence_clustering
pvtodorov/ecg_ptbxl_benchmarking
Public repository associated with "Deep Learning for ECG Analysis: Benchmarks and Insights from PTB-XL"
pvtodorov/geneBasisR
R package for gene selection using k-NN graphs.
pvtodorov/GeneSegNet
pvtodorov/gower
Python package for Gower distance
pvtodorov/graphing-library-docs
Plotly's graphing libraries documentation.
pvtodorov/ldsc
LD Score Regression (LDSC)
pvtodorov/Merino_2020
pvtodorov/miloDE
Framework for sensitive DE testing (using neighbourhoods)
pvtodorov/miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
pvtodorov/MindaGap
Fill empty grids of a panorama made from several tiles with sensefull values (mean of imediate neighbourhood)
pvtodorov/persist
pvtodorov/pvtsite
pvtodorov/seurat
R toolkit for single cell genomics
pvtodorov/systox
pvtodorov/timshel-bmicelltypes
Code to reproduce analysis and figures for 'Mapping heritability of obesity by cell types' (Timshel, bioRxiv 2020)
pvtodorov/toy_hook
toy hook for pre-commit
pvtodorov/UpSetPlot
Draw UpSet plots with Matplotlib
pvtodorov/xandr-audience-segments