Neurodocker is a command-line program that generates custom Dockerfiles and Singularity recipes for neuroimaging and minifies existing containers.
Please see our website https://www.repronim.org/neurodocker for more information.
Use the Neurodocker Docker image (recommended):
docker run --rm repronim/neurodocker:0.7.0 --helpThe Docker images were moved to repronim/neurodocker from kaczmarj/neurodocker.
This project can also be installed with pip:
pip install neurodocker
neurodocker --helpIf the pip install command above gives a permissions error, install as a non-root user:
pip install --user neurodockerNote: it is not yet possible to minimize Docker containers using the Neurodocker Docker image.
Clone the repository and install in editable mode.
git clone https://github.com/ReproNim/neurodocker
cd neurodocker
python -m pip install --no-cache-dir --editable .[all]
Before committing changes, initialize pre-commit with pre-commit install. This will format code with each commit to keep the style consistent. Neurodocker uses black for formatting.