Pinned Repositories
reproducible-computational-workflows
A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)
auto-ml
Example for using auto-sklearn
awesome-spark
A curated list of awesome Apache Spark packages and resources.
binder-neo4j
Example of a Binderised repo running neo4j
biojava-notebooks
BioJava examples in Jupyter Notebooks
ciml-summer-institute-2021
Repository for the CIML 2021 Summer Institute training materials.
covid-19-community
Community effort to build a Neo4j Knowledge Graph (KG) that links heterogenous data about COVID-19
mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
mmtf-workshop-2018
Structural Bioinformatics Training Workshop & Hackathon 2018
ten-rules-jupyter
Examples for paper: "Ten Simple Rules for Reproducible Research with Jupyter Notebooks"
pwrose's Repositories
pwrose/ciml-summer-institute-2021
Repository for the CIML 2021 Summer Institute training materials.
pwrose/ten-rules-jupyter
Examples for paper: "Ten Simple Rules for Reproducible Research with Jupyter Notebooks"
pwrose/auto-ml
Example for using auto-sklearn
pwrose/ciml-summer-institute-2022
Repository for the CIML 2022 Summer Institute training materials.
pwrose/ciml-summer-institute-2023
ciml-summer-institute-2023
pwrose/covid-19-community
Community effort to build a Neo4j Knowledge Graph (KG) that links heterogenous data about COVID-19
pwrose/covid-19-notebooks
Jupyter Notebooks to access COVID-19 datasets
pwrose/covid19-graph
Load COVID19 incident tracking data into Neo4j - source is JHU data
pwrose/df-parallel
Comparison of Dataframe libraries for parallel processing of large tabular files on CPU and GPU.
pwrose/enlace2021_pr
Project 19: Spatial, temporal, and phylogenetic analysis of COVID-19 spread
pwrose/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
pwrose/ipycytoscape
A Cytoscape Jupyter widget
pwrose/kg-bio
Downloads and prepares Biological Repositories for ingestion into Knowledge Graphs
pwrose/lineages
Parse SARS-CoV-2 lineages from publications
pwrose/mmtf-genomics
Methods for mapping genomic data onto 3D protein structure.
pwrose/mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
pwrose/mmtf-python
The python implementation of the MMTF API, decoder and encoder.
pwrose/mmtf-workshop-2018
Structural Bioinformatics Training Workshop & Hackathon 2018
pwrose/mmtf-workspace
Workspace to try out mmtf-pyspark features
pwrose/modin-test
Benchmark for Modin Dataframes
pwrose/neo4j-ipycytoscape
Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension
pwrose/neo4j-yfiles
Neo4j Graph visualization with yfiles plugin
pwrose/notebooks-sharing
This repository demonstrates the "Ten Simple Rules for Reproducible Research in Jupyter Notebook" rules for a simple machine learning problem
pwrose/python-jupyter
Introduction to Python in Jupyter Lab
pwrose/radx-data-dictionary-specification
A specification for CSV data dictionaries in the RADx data hub
pwrose/sdsc-summer-institute-2022
SDSC Summer Institute 2022 material
pwrose/sdsc-summer-institute-2023
pwrose/single-parameter-fit
Real numbers, data science and chaos: How to fit any dataset with a single parameter
pwrose/test_repo
Test repo for using the MolSSI Python CookieCutter
pwrose/tf-examples