Code accompanying Personally tailored cancer management based on knowledge banks of genomic and clinical data
This repository contains all code used for running the analysis in the above manuscript. It was used and tested in R-3.1.2.
The main code can be found in doc/SupplementaryMethodsCode.R. It was run in R using the command
rmarkdown::render("SupplementaryMethodsCode.R")
Additional code chunks can be found in code, mainly for parallelising some heavy computations in an LSF environment, and also code for the multistage prediction webtool.
Data is located in the data subfolder.