Pinned Repositories
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
faceswap
Non official project based on original /r/Deepfakes thread. Many thanks to him!
FastQMixer
Simulates FASTQ data from FASTA, creates mixes
gatk
Official code repository for GATK versions 4 and up
gitignore
A collection of useful .gitignore templates
hlaloh-pipeline
hla-typing by optitype & polysolver , detect loh by lohhla.
lancet
Microassembly based somatic variant caller for NGS data
MSI_analyse
A improvement on MSI status calculataion
scarHRD_snakemake_pipeline
parallel sequenza + scarHRD
VarScan2
Fix some bugs for low min-variant-freq & some MS site reported as Somatic-indel issue.
pyc1216's Repositories
pyc1216/hlaloh-pipeline
hla-typing by optitype & polysolver , detect loh by lohhla.
pyc1216/scarHRD_snakemake_pipeline
parallel sequenza + scarHRD
pyc1216/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
pyc1216/faceswap
Non official project based on original /r/Deepfakes thread. Many thanks to him!
pyc1216/FastQMixer
Simulates FASTQ data from FASTA, creates mixes
pyc1216/gatk
Official code repository for GATK versions 4 and up
pyc1216/gitignore
A collection of useful .gitignore templates
pyc1216/lancet
Microassembly based somatic variant caller for NGS data
pyc1216/MSI_analyse
A improvement on MSI status calculataion
pyc1216/VarScan2
Fix some bugs for low min-variant-freq & some MS site reported as Somatic-indel issue.
pyc1216/go-library
Go语言入门、Go相关优质资料等分享
pyc1216/HLAminer
⛏HLA predictions from NGS shotgun data
pyc1216/learngit
pyc1216/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
pyc1216/tangEpiNGSInstall
Installtion for tangEpiNGSSftw
pyc1216/vcfmgr
variant merge and hgvs_g 3'rule adjustment