Pinned Repositories
Synteny-based-annotator
This collection of scripts will provide annotations for hypothetical proteins and poorly-annotated prokaryotic genes. If you are a microbiologist with a newly sequenced genome, I highly recommend this script. The citation for the paper on the method development can be found here: Yelton, A.P., Thomas B.C., Simmons, S.L., Wilmes P., Zemla A., Thelen M.P., Justice N., Banfield J.F. A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes. PLoS Computational Biology. In press.
genoPlotR-add-ons
These functions can be used with the genoPlotR R package to add functionality
Practical_Machine_Learning
Course project for Coursera Practical Machine Learning course
runtrainr
runtrainr app (predict and improve your half marathon time)
copilot-hands-on
Hands on GitHub Copilot workshop used/owned by the GitHub Enterprise Advocate team.
examples
Deep Learning Examples
fbprophet_shf_extension
Final_project
kmodes
Python implementations of the k-modes and k-prototypes clustering algorithms, for clustering categorical data
large-language-models
Notebooks for Large Language Models (LLMs) Specialization
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