pylelab
Welcome to the Pyle Lab. We explore RNA biology, studying the molecular interactions important for RNA structures and the activities of RNA-protein machines.
Pinned Repositories
AMIGOS
AMIGOS reads an RNA PDB file and outputs a complete table of torsion angle calculations
AMIGOSIII
Pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids
Arena
CSSR
Assignment of secondary structure to coarse-grain RNA 3D structures
MRTModSeq
Modification profiling with Marathon RT
rMSA
RNA Multiple Sequence Alignment
RNAlibraries
Discrete RNA Libraries from Pseudo-Torsional Space
RSCanner
SARS-CoV-2_SHAPE_MaP_structure
USalign
Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
pylelab's Repositories
pylelab/USalign
Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
pylelab/rMSA
RNA Multiple Sequence Alignment
pylelab/Arena
pylelab/CSSR
Assignment of secondary structure to coarse-grain RNA 3D structures
pylelab/RSCanner
pylelab/SARS-CoV-2_SHAPE_MaP_structure
pylelab/AMIGOSIII
Pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids
pylelab/RNAlibraries
Discrete RNA Libraries from Pseudo-Torsional Space
pylelab/AMIGOS
AMIGOS reads an RNA PDB file and outputs a complete table of torsion angle calculations
pylelab/MRTModSeq
Modification profiling with Marathon RT
pylelab/SARS-CoV-2_global_local_structure
pylelab/AMIGOSII
interactive comparisons between RNA structures and database searches for specific RNA structures or substructures.
pylelab/HCV_Secondary_Structure
The Coding Region of the HCV Genome Contains a Network of Regulatory RNA Structures
pylelab/HCV_SHAPE_MaP_Structure
pylelab/HOTAIR_Secondary_Structure
HOTAIR forms an intricate and modular secondary structure
pylelab/PRIMOS
Interactive comparisons between RNA structures anddatabase searches for specific RNA structures or substructures.
pylelab/RCrane.CLI
RCrane.CLI uses phosphate and glycosidic bond coordinates to predict and build backbone structure.
pylelab/RepA_Secondary_Structure
Visualizing the secondary and tertiary architectural domains of lncRNA RepA
pylelab/SHEVEK
A computational method for predicting intramolecular and intermolecular biopolymer interactions
pylelab/Supp_data_Tavares_et_al_JMB_2019
pylelab/Tb-seq