Pinned Repositories
bamread
Bam to Pandas DataFrame, quickly
bwread
Read bigwig into pyranges or dataframe
fishers_exact_test
Fishers Exact Test for Python (Cython)
ncls
The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.
pyranges
Performant Pythonic GenomicRanges
pyranges.github.io
PyRanges docs
pyranges_1.x
PyRanges as a DataFrame subclass.
pyranges_plot
Gene visualization package for dataframe objects generated with PyRanges
pyrle
Numerical Run Length Encoding and Arithmetic in Cython
sorted_nearest
Cython helper library for pyranges. Find nearest interval in linear time at C speed.
pyranges's Repositories
pyranges/pyranges
Performant Pythonic GenomicRanges
pyranges/ncls
The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.
pyranges/pyrle
Numerical Run Length Encoding and Arithmetic in Cython
pyranges/bamread
Bam to Pandas DataFrame, quickly
pyranges/pyranges_1.x
PyRanges as a DataFrame subclass.
pyranges/bwread
Read bigwig into pyranges or dataframe
pyranges/pyranges_plot
Gene visualization package for dataframe objects generated with PyRanges
pyranges/sorted_nearest
Cython helper library for pyranges. Find nearest interval in linear time at C speed.
pyranges/fishers_exact_test
Fishers Exact Test for Python (Cython)
pyranges/pyranges.github.io
PyRanges docs
pyranges/pyranges_db
pyranges add-on to fetch annotation data from UCSC, gencode and ensembl
pyranges/pyranges_example_data
Example data for pyranges