qianfeng2

qianfeng2's Stars

• zhilizheng/SBayesRC

  Language:C++276

• qianfeng2/cUps

  An algorithm for classifying malaria var genes into ups groups

  Language:Python2

• qianfeng2/detREC_program

  A Program to Detect Recombinants From Unaligned Sequences

  Language:C++8

• UniMelb-Day-Lab/tutorialDBLalpha

  Tutorial designed to guide a user through the bioinformatic pipelines developed by the Day Lab to clean, cluster, and classify DBLa sequences.

  Language:HTML2

• pedlefsen/hiv-founder-id

  Estimate founders of HIV-1 infection using nucleotide sequences from very acute infection

  Language:R32

• GCJMackenzie/Varia

  Repository for Varia package, containing Varia VIP and Varia GEM

  Language:Gnuplot31

• shaunpwilkinson/aphid

  Analysis with Profile Hidden Markov Models

  Language:R224

• sa-lee/fluentGenomics

  plyranges and tximeta case study

  Language:TeX73

• ThomasDOtto/varDB

  Script how to assemble var genes in Plasmodium falciparum

  Language:Perl55

• ih-lab/Meltos

  Meltos: Multi-Sample Tumor Phylogeny Reconstruction for Structural Variants

  Language:Java72

• qianfeng2/PNcode

  Python code for HMM etc.

  Language:Jupyter Notebook1

• Superzchen/iLearn

  iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, Feature Normalization, Dimension Reduction and Model Construction for Classification, Best Model Selection, Ensemble Learning and Result Visualization for DNA, RNA and Protein Sequences.

  Language:Python7730

• qianfeng2/workflowr

  Papers reviews and book notes throughout my PhD are available here:

  Language:R2

• qianfeng2/qianfeng2.github.io

  Personal Website

  Language:HTML1

• pascualgroup/VarModel

  originally written by Ed, this code was modified and extended by Qixin

  Language:C++1

• zaczap/sardinia

  Code and data to re-generate figures for the Sardinia expression paper

  Language:R1

• mdrasmus/argweaver

  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

  Language:C++4919

• phyloseminar/phyloseminar.org

  The material and code used to make the phyloseminar.org website.

  Language:HTML81