qingnanl

ALTSS

Using single-nuclei ATAC-seq data to study alternative transcription start site usage.

FromScratch

A collection of notebooks and code where I discuss the theory then implement data science algorithms. from scratch.

gsdensity

GSDensity_manuscript_code

human-retina-multiomics

Code for analyzing human retina single-cell data

LSGI

Local Spatial Gradient Inference

LSGI_manuscript_code

mcaext

mcaext.temp

identification of deviated pathway and the most relevant cells (temporary)

SRAVG

qingnanl/gsdensity

qingnanl/GSDensity_manuscript_code

qingnanl/human-retina-multiomics

Code for analyzing human retina single-cell data

qingnanl/LSGI

Local Spatial Gradient Inference

qingnanl/SRAVG

qingnanl/ALTSS

Using single-nuclei ATAC-seq data to study alternative transcription start site usage.

qingnanl/FromScratch

A collection of notebooks and code where I discuss the theory then implement data science algorithms. from scratch.

qingnanl/LSGI_manuscript_code

qingnanl/mcaext

qingnanl/mcaext.temp

identification of deviated pathway and the most relevant cells (temporary)

qingnanl/NGS

Next-Gen Sequencing tools from the Horvath Lab

qingnanl/oneliners

Useful bash one-liners for bioinformatics.

qingnanl/qingnanliang.github.io

qingnanl/scRNA-seq_code

This repository is to store code used for scRNA-seq, including preprocessing, clustering, downstream analysis and plotting.

qingnanl/single-cell-tools

some single-cell tools that may be useful

qingnanl/singleCellHaystack

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).